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ASMTL (acetylserotonin O-methyltransferase-like)

Identity

Other aliasASMTLX
ASMTLY
ASTML
HGNC (Hugo) ASMTL
LocusID (NCBI) 8623
Atlas_Id 47200
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 1522032 and ends at 1572655 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASMTL   751
Cards
Entrez_Gene (NCBI)ASMTL  8623  acetylserotonin O-methyltransferase-like
AliasesASMTLX; ASMTLY; ASTML
GeneCards (Weizmann)ASMTL
Ensembl hg19 (Hinxton)ENSG00000169093 [Gene_View]  chrX:1522032-1572655 [Contig_View]  ASMTL [Vega]
Ensembl hg38 (Hinxton)ENSG00000169093 [Gene_View]  chrX:1522032-1572655 [Contig_View]  ASMTL [Vega]
ICGC DataPortalENSG00000169093
TCGA cBioPortalASMTL
AceView (NCBI)ASMTL
Genatlas (Paris)ASMTL
WikiGenes8623
SOURCE (Princeton)ASMTL
Genetics Home Reference (NIH)ASMTL
Genomic and cartography
GoldenPath hg19 (UCSC)ASMTL  -     chrX:1522032-1572655 -  Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASMTL  -     Xp22.33   [Description]    (hg38-Dec_2013)
EnsemblASMTL - Xp22.33 [CytoView hg19]  ASMTL - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIASMTL [Mapview hg19]  ASMTL [Mapview hg38]
OMIM300162   400011   
Gene and transcription
Genbank (Entrez)AK001090 AK090498 AK225770 AK297805 AK299231
RefSeq transcript (Entrez)NM_001173473 NM_001173474 NM_004192
RefSeq genomic (Entrez)NC_000023 NC_000024 NC_018934 NG_016772 NT_167201 NT_187358 NW_004929437
Consensus coding sequences : CCDS (NCBI)ASMTL
Cluster EST : UnigeneHs.533514 [ NCBI ]
CGAP (NCI)Hs.533514
Alternative Splicing GalleryENSG00000169093
Gene ExpressionASMTL [ NCBI-GEO ]   ASMTL [ EBI - ARRAY_EXPRESS ]   ASMTL [ SEEK ]   ASMTL [ MEM ]
Gene Expression Viewer (FireBrowse)ASMTL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8623
GTEX Portal (Tissue expression)ASMTL
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95671   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95671  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95671
Splice isoforms : SwissVarO95671
PhosPhoSitePlusO95671
Domaine pattern : Prosite (Expaxy)SAM_OMT_II (PS51683)   
Domains : Interpro (EBI)ASMT_dimerisation    ITPase-like_fam    Maf    O-MeTrfase_COMT    O_MeTrfase_2    SAM-dependent_MTases    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Dimerisation2 (PF16864)    Maf (PF02545)    Methyltransf_2 (PF00891)   
Domain families : Pfam (NCBI)pfam16864    pfam02545    pfam00891   
Conserved Domain (NCBI)ASMTL
DMDM Disease mutations8623
Blocks (Seattle)ASMTL
PDB (SRS)2P5X   
PDB (PDBSum)2P5X   
PDB (IMB)2P5X   
PDB (RSDB)2P5X   
Structural Biology KnowledgeBase2P5X   
SCOP (Structural Classification of Proteins)2P5X   
CATH (Classification of proteins structures)2P5X   
SuperfamilyO95671
Human Protein AtlasENSG00000169093
Peptide AtlasO95671
HPRD02156
IPIIPI00479385   IPI00249080   IPI00909010   IPI00956483   
Protein Interaction databases
DIP (DOE-UCLA)O95671
IntAct (EBI)O95671
FunCoupENSG00000169093
BioGRIDASMTL
STRING (EMBL)ASMTL
ZODIACASMTL
Ontologies - Pathways
QuickGOO95671
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  biological_process  O-methyltransferase activity  methylation  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  biological_process  O-methyltransferase activity  methylation  
NDEx NetworkASMTL
Atlas of Cancer Signalling NetworkASMTL
Wikipedia pathwaysASMTL
Orthology - Evolution
OrthoDB8623
GeneTree (enSembl)ENSG00000169093
Phylogenetic Trees/Animal Genes : TreeFamASMTL
HOVERGENO95671
HOGENOMO95671
Homologs : HomoloGeneASMTL
Homology/Alignments : Family Browser (UCSC)ASMTL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASMTL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASMTL
dbVarASMTL
ClinVarASMTL
1000_GenomesASMTL 
Exome Variant ServerASMTL
ExAC (Exome Aggregation Consortium)ASMTL (select the gene name)
Genetic variants : HAPMAP8623
Genomic Variants (DGV)ASMTL [DGVbeta]
DECIPHER (Syndromes)X:1522032-1572655  ENSG00000169093
CONAN: Copy Number AnalysisASMTL 
Mutations
ICGC Data PortalASMTL 
TCGA Data PortalASMTL 
Broad Tumor PortalASMTL
OASIS PortalASMTL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASMTL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASMTL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ASMTL
DgiDB (Drug Gene Interaction Database)ASMTL
DoCM (Curated mutations)ASMTL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASMTL (select a term)
intoGenASMTL
Cancer3DASMTL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300162    400011   
Orphanet
MedgenASMTL
Genetic Testing Registry ASMTL
NextProtO95671 [Medical]
TSGene8623
GENETestsASMTL
Huge Navigator ASMTL [HugePedia]
snp3D : Map Gene to Disease8623
BioCentury BCIQASMTL
ClinGenASMTL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8623
Chemical/Pharm GKB GenePA25050
Clinical trialASMTL
Miscellaneous
canSAR (ICR)ASMTL (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASMTL
EVEXASMTL
GoPubMedASMTL
iHOPASMTL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:13 CEST 2017

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