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ASNSD1 (asparagine synthetase domain containing 1)

Identity

Alias_symbol (synonym)NS3TP1
FLJ20752
NBLA00058
Other alias
HGNC (Hugo) ASNSD1
LocusID (NCBI) 54529
Atlas_Id 60576
Location 2q32.2  [Link to chromosome band 2q32]
Location_base_pair Starts at 190526125 and ends at 190535557 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASNSD1 (2q32.2) / SUPT6H (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASNSD1   24910
Cards
Entrez_Gene (NCBI)ASNSD1  54529  asparagine synthetase domain containing 1
AliasesNBLA00058; NS3TP1
GeneCards (Weizmann)ASNSD1
Ensembl hg19 (Hinxton)ENSG00000138381 [Gene_View]  chr2:190526125-190535557 [Contig_View]  ASNSD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138381 [Gene_View]  chr2:190526125-190535557 [Contig_View]  ASNSD1 [Vega]
ICGC DataPortalENSG00000138381
TCGA cBioPortalASNSD1
AceView (NCBI)ASNSD1
Genatlas (Paris)ASNSD1
WikiGenes54529
SOURCE (Princeton)ASNSD1
Genetics Home Reference (NIH)ASNSD1
Genomic and cartography
GoldenPath hg19 (UCSC)ASNSD1  -     chr2:190526125-190535557 +  2q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASNSD1  -     2q32.2   [Description]    (hg38-Dec_2013)
EnsemblASNSD1 - 2q32.2 [CytoView hg19]  ASNSD1 - 2q32.2 [CytoView hg38]
Mapping of homologs : NCBIASNSD1 [Mapview hg19]  ASNSD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075481 AK000759 AY116969 BC001243 DA771653
RefSeq transcript (Entrez)NM_019048
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)ASNSD1
Cluster EST : UnigeneHs.101364 [ NCBI ]
CGAP (NCI)Hs.101364
Alternative Splicing GalleryENSG00000138381
Gene ExpressionASNSD1 [ NCBI-GEO ]   ASNSD1 [ EBI - ARRAY_EXPRESS ]   ASNSD1 [ SEEK ]   ASNSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASNSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54529
GTEX Portal (Tissue expression)ASNSD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWL6
Splice isoforms : SwissVarQ9NWL6
PhosPhoSitePlusQ9NWL6
Domaine pattern : Prosite (Expaxy)GATASE_TYPE_2 (PS51278)   
Domains : Interpro (EBI)Asn_synthase    GATase_2_dom    GATase_dom    Ntn_hydrolases_N    Rossmann-like_a/b/a_fold   
Domain families : Pfam (Sanger)Asn_synthase (PF00733)    GATase_7 (PF13537)   
Domain families : Pfam (NCBI)pfam00733    pfam13537   
Conserved Domain (NCBI)ASNSD1
DMDM Disease mutations54529
Blocks (Seattle)ASNSD1
SuperfamilyQ9NWL6
Human Protein AtlasENSG00000138381
Peptide AtlasQ9NWL6
HPRD17645
IPIIPI00005084   IPI00917456   IPI00916082   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWL6
IntAct (EBI)Q9NWL6
FunCoupENSG00000138381
BioGRIDASNSD1
STRING (EMBL)ASNSD1
ZODIACASNSD1
Ontologies - Pathways
QuickGOQ9NWL6
Ontology : AmiGOmolecular_function  asparagine synthase (glutamine-hydrolyzing) activity  cellular_component  asparagine biosynthetic process  glutamine metabolic process  biological_process  
Ontology : EGO-EBImolecular_function  asparagine synthase (glutamine-hydrolyzing) activity  cellular_component  asparagine biosynthetic process  glutamine metabolic process  biological_process  
NDEx NetworkASNSD1
Atlas of Cancer Signalling NetworkASNSD1
Wikipedia pathwaysASNSD1
Orthology - Evolution
OrthoDB54529
GeneTree (enSembl)ENSG00000138381
Phylogenetic Trees/Animal Genes : TreeFamASNSD1
HOVERGENQ9NWL6
HOGENOMQ9NWL6
Homologs : HomoloGeneASNSD1
Homology/Alignments : Family Browser (UCSC)ASNSD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASNSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASNSD1
dbVarASNSD1
ClinVarASNSD1
1000_GenomesASNSD1 
Exome Variant ServerASNSD1
ExAC (Exome Aggregation Consortium)ASNSD1 (select the gene name)
Genetic variants : HAPMAP54529
Genomic Variants (DGV)ASNSD1 [DGVbeta]
DECIPHER (Syndromes)2:190526125-190535557  ENSG00000138381
CONAN: Copy Number AnalysisASNSD1 
Mutations
ICGC Data PortalASNSD1 
TCGA Data PortalASNSD1 
Broad Tumor PortalASNSD1
OASIS PortalASNSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASNSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASNSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASNSD1
DgiDB (Drug Gene Interaction Database)ASNSD1
DoCM (Curated mutations)ASNSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASNSD1 (select a term)
intoGenASNSD1
Cancer3DASNSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASNSD1
Genetic Testing Registry ASNSD1
NextProtQ9NWL6 [Medical]
TSGene54529
GENETestsASNSD1
Huge Navigator ASNSD1 [HugePedia]
snp3D : Map Gene to Disease54529
BioCentury BCIQASNSD1
ClinGenASNSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54529
Chemical/Pharm GKB GenePA143485312
Clinical trialASNSD1
Miscellaneous
canSAR (ICR)ASNSD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASNSD1
EVEXASNSD1
GoPubMedASNSD1
iHOPASNSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:14 CET 2017

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