Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASPDH (aspartate dehydrogenase domain containing)

Identity

Other alias-
HGNC (Hugo) ASPDH
LocusID (NCBI) 554235
Atlas_Id 60578
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 51014857 and ends at 51017947 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KCNC3 (19q13.33) / ASPDH (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASPDH   33856
Cards
Entrez_Gene (NCBI)ASPDH  554235  aspartate dehydrogenase domain containing
Aliases
GeneCards (Weizmann)ASPDH
Ensembl hg19 (Hinxton)ENSG00000204653 [Gene_View]  chr19:51014857-51017947 [Contig_View]  ASPDH [Vega]
Ensembl hg38 (Hinxton)ENSG00000204653 [Gene_View]  chr19:51014857-51017947 [Contig_View]  ASPDH [Vega]
ICGC DataPortalENSG00000204653
TCGA cBioPortalASPDH
AceView (NCBI)ASPDH
Genatlas (Paris)ASPDH
WikiGenes554235
SOURCE (Princeton)ASPDH
Genetics Home Reference (NIH)ASPDH
Genomic and cartography
GoldenPath hg19 (UCSC)ASPDH  -     chr19:51014857-51017947 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASPDH  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblASPDH - 19q13.33 [CytoView hg19]  ASPDH - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIASPDH [Mapview hg19]  ASPDH [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC066359 BM695973 BM924033 BU729215 HQ447567
RefSeq transcript (Entrez)NM_001024656 NM_001114598
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ASPDH
Cluster EST : UnigeneHs.436338 [ NCBI ]
CGAP (NCI)Hs.436338
Alternative Splicing GalleryENSG00000204653
Gene ExpressionASPDH [ NCBI-GEO ]   ASPDH [ EBI - ARRAY_EXPRESS ]   ASPDH [ SEEK ]   ASPDH [ MEM ]
Gene Expression Viewer (FireBrowse)ASPDH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554235
GTEX Portal (Tissue expression)ASPDH
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6ND91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6ND91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6ND91
Splice isoforms : SwissVarA6ND91
Catalytic activity : Enzyme1.4.1.21 [ Enzyme-Expasy ]   1.4.1.211.4.1.21 [ IntEnz-EBI ]   1.4.1.21 [ BRENDA ]   1.4.1.21 [ KEGG ]   
PhosPhoSitePlusA6ND91
Domains : Interpro (EBI)Asp/hSer_DH_NAD-bd    Asp_DH    L-Asp_DH    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)DUF108 (PF01958)    NAD_binding_3 (PF03447)   
Domain families : Pfam (NCBI)pfam01958    pfam03447   
Conserved Domain (NCBI)ASPDH
DMDM Disease mutations554235
Blocks (Seattle)ASPDH
SuperfamilyA6ND91
Human Protein AtlasENSG00000204653
Peptide AtlasA6ND91
HPRD18692
IPIIPI00419903   IPI00783370   
Protein Interaction databases
DIP (DOE-UCLA)A6ND91
IntAct (EBI)A6ND91
FunCoupENSG00000204653
BioGRIDASPDH
STRING (EMBL)ASPDH
ZODIACASPDH
Ontologies - Pathways
QuickGOA6ND91
Ontology : AmiGONADP catabolic process  NAD biosynthetic process  aspartate dehydrogenase activity  NADP binding  oxidation-reduction process  
Ontology : EGO-EBINADP catabolic process  NAD biosynthetic process  aspartate dehydrogenase activity  NADP binding  oxidation-reduction process  
NDEx NetworkASPDH
Atlas of Cancer Signalling NetworkASPDH
Wikipedia pathwaysASPDH
Orthology - Evolution
OrthoDB554235
GeneTree (enSembl)ENSG00000204653
Phylogenetic Trees/Animal Genes : TreeFamASPDH
HOVERGENA6ND91
HOGENOMA6ND91
Homologs : HomoloGeneASPDH
Homology/Alignments : Family Browser (UCSC)ASPDH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASPDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASPDH
dbVarASPDH
ClinVarASPDH
1000_GenomesASPDH 
Exome Variant ServerASPDH
ExAC (Exome Aggregation Consortium)ASPDH (select the gene name)
Genetic variants : HAPMAP554235
Genomic Variants (DGV)ASPDH [DGVbeta]
DECIPHER (Syndromes)19:51014857-51017947  ENSG00000204653
CONAN: Copy Number AnalysisASPDH 
Mutations
ICGC Data PortalASPDH 
TCGA Data PortalASPDH 
Broad Tumor PortalASPDH
OASIS PortalASPDH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASPDH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASPDH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASPDH
DgiDB (Drug Gene Interaction Database)ASPDH
DoCM (Curated mutations)ASPDH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASPDH (select a term)
intoGenASPDH
Cancer3DASPDH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASPDH
Genetic Testing Registry ASPDH
NextProtA6ND91 [Medical]
TSGene554235
GENETestsASPDH
Huge Navigator ASPDH [HugePedia]
snp3D : Map Gene to Disease554235
BioCentury BCIQASPDH
ClinGenASPDH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554235
Chemical/Pharm GKB GenePA164716234
Clinical trialASPDH
Miscellaneous
canSAR (ICR)ASPDH (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASPDH
EVEXASPDH
GoPubMedASPDH
iHOPASPDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:55:14 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.