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ASPHD2 (aspartate beta-hydroxylase domain containing 2)

Identity

Alias_symbol (synonym)FLJ39838
Other alias-
HGNC (Hugo) ASPHD2
LocusID (NCBI) 57168
Atlas_Id 60581
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 26825280 and ends at 26840978 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP21 (10p12.1) / ASPHD2 (22q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASPHD2   30437
Cards
Entrez_Gene (NCBI)ASPHD2  57168  aspartate beta-hydroxylase domain containing 2
Aliases
GeneCards (Weizmann)ASPHD2
Ensembl hg19 (Hinxton)ENSG00000128203 [Gene_View]  chr22:26825280-26840978 [Contig_View]  ASPHD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128203 [Gene_View]  chr22:26825280-26840978 [Contig_View]  ASPHD2 [Vega]
ICGC DataPortalENSG00000128203
TCGA cBioPortalASPHD2
AceView (NCBI)ASPHD2
Genatlas (Paris)ASPHD2
WikiGenes57168
SOURCE (Princeton)ASPHD2
Genetics Home Reference (NIH)ASPHD2
Genomic and cartography
GoldenPath hg19 (UCSC)ASPHD2  -     chr22:26825280-26840978 +  22q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASPHD2  -     22q12.1   [Description]    (hg38-Dec_2013)
EnsemblASPHD2 - 22q12.1 [CytoView hg19]  ASPHD2 - 22q12.1 [CytoView hg38]
Mapping of homologs : NCBIASPHD2 [Mapview hg19]  ASPHD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097157 AK315112 AL161993 BC036753 CR456391
RefSeq transcript (Entrez)NM_020437
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)ASPHD2
Cluster EST : UnigeneHs.567547 [ NCBI ]
CGAP (NCI)Hs.567547
Alternative Splicing GalleryENSG00000128203
Gene ExpressionASPHD2 [ NCBI-GEO ]   ASPHD2 [ EBI - ARRAY_EXPRESS ]   ASPHD2 [ SEEK ]   ASPHD2 [ MEM ]
Gene Expression Viewer (FireBrowse)ASPHD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57168
GTEX Portal (Tissue expression)ASPHD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ICH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ICH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ICH7
Splice isoforms : SwissVarQ6ICH7
PhosPhoSitePlusQ6ICH7
Domains : Interpro (EBI)Asp_Arg_Pro-Hydrxlase    IPNS-like   
Domain families : Pfam (Sanger)Asp_Arg_Hydrox (PF05118)   
Domain families : Pfam (NCBI)pfam05118   
Conserved Domain (NCBI)ASPHD2
DMDM Disease mutations57168
Blocks (Seattle)ASPHD2
SuperfamilyQ6ICH7
Human Protein AtlasENSG00000128203
Peptide AtlasQ6ICH7
HPRD14255
IPIIPI00465237   
Protein Interaction databases
DIP (DOE-UCLA)Q6ICH7
IntAct (EBI)Q6ICH7
FunCoupENSG00000128203
BioGRIDASPHD2
STRING (EMBL)ASPHD2
ZODIACASPHD2
Ontologies - Pathways
QuickGOQ6ICH7
Ontology : AmiGOmembrane  integral component of membrane  peptidyl-amino acid modification  metal ion binding  dioxygenase activity  oxidation-reduction process  
Ontology : EGO-EBImembrane  integral component of membrane  peptidyl-amino acid modification  metal ion binding  dioxygenase activity  oxidation-reduction process  
NDEx NetworkASPHD2
Atlas of Cancer Signalling NetworkASPHD2
Wikipedia pathwaysASPHD2
Orthology - Evolution
OrthoDB57168
GeneTree (enSembl)ENSG00000128203
Phylogenetic Trees/Animal Genes : TreeFamASPHD2
HOVERGENQ6ICH7
HOGENOMQ6ICH7
Homologs : HomoloGeneASPHD2
Homology/Alignments : Family Browser (UCSC)ASPHD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASPHD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASPHD2
dbVarASPHD2
ClinVarASPHD2
1000_GenomesASPHD2 
Exome Variant ServerASPHD2
ExAC (Exome Aggregation Consortium)ASPHD2 (select the gene name)
Genetic variants : HAPMAP57168
Genomic Variants (DGV)ASPHD2 [DGVbeta]
DECIPHER (Syndromes)22:26825280-26840978  ENSG00000128203
CONAN: Copy Number AnalysisASPHD2 
Mutations
ICGC Data PortalASPHD2 
TCGA Data PortalASPHD2 
Broad Tumor PortalASPHD2
OASIS PortalASPHD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASPHD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASPHD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASPHD2
DgiDB (Drug Gene Interaction Database)ASPHD2
DoCM (Curated mutations)ASPHD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASPHD2 (select a term)
intoGenASPHD2
Cancer3DASPHD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASPHD2
Genetic Testing Registry ASPHD2
NextProtQ6ICH7 [Medical]
TSGene57168
GENETestsASPHD2
Huge Navigator ASPHD2 [HugePedia]
snp3D : Map Gene to Disease57168
BioCentury BCIQASPHD2
ClinGenASPHD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57168
Chemical/Pharm GKB GenePA143485314
Clinical trialASPHD2
Miscellaneous
canSAR (ICR)ASPHD2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASPHD2
EVEXASPHD2
GoPubMedASPHD2
iHOPASPHD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:15 CET 2017

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