Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASTE1 (asteroid homolog 1 (Drosophila))

Identity

Alias_symbol (synonym)HT001
Other alias
HGNC (Hugo) ASTE1
LocusID (NCBI) 28990
Atlas_Id 42917
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 130732717 and ends at 130745698 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASTE1   25021
Cards
Entrez_Gene (NCBI)ASTE1  28990  asteroid homolog 1 (Drosophila)
AliasesHT001
GeneCards (Weizmann)ASTE1
Ensembl hg19 (Hinxton)ENSG00000034533 [Gene_View]  chr3:130732717-130745698 [Contig_View]  ASTE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000034533 [Gene_View]  chr3:130732717-130745698 [Contig_View]  ASTE1 [Vega]
ICGC DataPortalENSG00000034533
TCGA cBioPortalASTE1
AceView (NCBI)ASTE1
Genatlas (Paris)ASTE1
WikiGenes28990
SOURCE (Princeton)ASTE1
Genetics Home Reference (NIH)ASTE1
Genomic and cartography
GoldenPath hg19 (UCSC)ASTE1  -     chr3:130732717-130745698 -  3q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASTE1  -     3q22.1   [Description]    (hg38-Dec_2013)
EnsemblASTE1 - 3q22.1 [CytoView hg19]  ASTE1 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIASTE1 [Mapview hg19]  ASTE1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF113539 AK027258 AK027806 AK294156 AK301388
RefSeq transcript (Entrez)NM_001288950 NM_014065
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ASTE1
Cluster EST : UnigeneHs.100878 [ NCBI ]
CGAP (NCI)Hs.100878
Alternative Splicing GalleryENSG00000034533
Gene ExpressionASTE1 [ NCBI-GEO ]   ASTE1 [ EBI - ARRAY_EXPRESS ]   ASTE1 [ SEEK ]   ASTE1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASTE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28990
GTEX Portal (Tissue expression)ASTE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TB18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TB18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TB18
Splice isoforms : SwissVarQ2TB18
PhosPhoSitePlusQ2TB18
Domains : Interpro (EBI)Asteroid    PIN_domain-like    XPG_DNA_repair_N   
Domain families : Pfam (Sanger)XPG_N (PF00752)   
Domain families : Pfam (NCBI)pfam00752   
Conserved Domain (NCBI)ASTE1
DMDM Disease mutations28990
Blocks (Seattle)ASTE1
SuperfamilyQ2TB18
Human Protein AtlasENSG00000034533
Peptide AtlasQ2TB18
HPRD11038
IPIIPI00337328   IPI00790409   IPI00790975   IPI00965138   IPI00963890   IPI00966871   IPI00789587   IPI00965618   
Protein Interaction databases
DIP (DOE-UCLA)Q2TB18
IntAct (EBI)Q2TB18
FunCoupENSG00000034533
BioGRIDASTE1
STRING (EMBL)ASTE1
ZODIACASTE1
Ontologies - Pathways
QuickGOQ2TB18
Ontology : AmiGOnuclease activity  protein binding  DNA repair  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInuclease activity  protein binding  DNA repair  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkASTE1
Atlas of Cancer Signalling NetworkASTE1
Wikipedia pathwaysASTE1
Orthology - Evolution
OrthoDB28990
GeneTree (enSembl)ENSG00000034533
Phylogenetic Trees/Animal Genes : TreeFamASTE1
HOVERGENQ2TB18
HOGENOMQ2TB18
Homologs : HomoloGeneASTE1
Homology/Alignments : Family Browser (UCSC)ASTE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASTE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASTE1
dbVarASTE1
ClinVarASTE1
1000_GenomesASTE1 
Exome Variant ServerASTE1
ExAC (Exome Aggregation Consortium)ASTE1 (select the gene name)
Genetic variants : HAPMAP28990
Genomic Variants (DGV)ASTE1 [DGVbeta]
DECIPHER (Syndromes)3:130732717-130745698  ENSG00000034533
CONAN: Copy Number AnalysisASTE1 
Mutations
ICGC Data PortalASTE1 
TCGA Data PortalASTE1 
Broad Tumor PortalASTE1
OASIS PortalASTE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASTE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASTE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASTE1
DgiDB (Drug Gene Interaction Database)ASTE1
DoCM (Curated mutations)ASTE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASTE1 (select a term)
intoGenASTE1
Cancer3DASTE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASTE1
Genetic Testing Registry ASTE1
NextProtQ2TB18 [Medical]
TSGene28990
GENETestsASTE1
Huge Navigator ASTE1 [HugePedia]
snp3D : Map Gene to Disease28990
BioCentury BCIQASTE1
ClinGenASTE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28990
Chemical/Pharm GKB GenePA142672577
Clinical trialASTE1
Miscellaneous
canSAR (ICR)ASTE1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASTE1
EVEXASTE1
GoPubMedASTE1
iHOPASTE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:53:15 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.