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ASTN1 (astrotactin 1)

Identity

Alias_namesASTN
astrotactin
Other alias
HGNC (Hugo) ASTN1
LocusID (NCBI) 460
Atlas_Id 60583
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 176857305 and ends at 177164904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASRGL1 (11q12.3) / ASTN1 (1q25.2)ASTN1 (1q25.2) / ASTN1 (1q25.2)ASTN1 (1q25.2) / ATP2A3 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASTN1   773
Cards
Entrez_Gene (NCBI)ASTN1  460  astrotactin 1
AliasesASTN
GeneCards (Weizmann)ASTN1
Ensembl hg19 (Hinxton)ENSG00000152092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152092 [Gene_View]  chr1:176857305-177164904 [Contig_View]  ASTN1 [Vega]
ICGC DataPortalENSG00000152092
TCGA cBioPortalASTN1
AceView (NCBI)ASTN1
Genatlas (Paris)ASTN1
WikiGenes460
SOURCE (Princeton)ASTN1
Genetics Home Reference (NIH)ASTN1
Genomic and cartography
GoldenPath hg38 (UCSC)ASTN1  -     chr1:176857305-177164904 -  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASTN1  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblASTN1 - 1q25.2 [CytoView hg19]  ASTN1 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBIASTN1 [Mapview hg19]  ASTN1 [Mapview hg38]
OMIM600904   
Gene and transcription
Genbank (Entrez)AB006627 AK295126 AK307820 AK309094 AU132309
RefSeq transcript (Entrez)NM_001286164 NM_004319 NM_207108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASTN1
Cluster EST : UnigeneHs.495897 [ NCBI ]
CGAP (NCI)Hs.495897
Alternative Splicing GalleryENSG00000152092
Gene ExpressionASTN1 [ NCBI-GEO ]   ASTN1 [ EBI - ARRAY_EXPRESS ]   ASTN1 [ SEEK ]   ASTN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASTN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)460
GTEX Portal (Tissue expression)ASTN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14525   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14525  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14525
Splice isoforms : SwissVarO14525
PhosPhoSitePlusO14525
Domains : Interpro (EBI)Astrotactin    EGF-like_dom    FN3_dom    Ig-like_fold    MACPF   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EGF (SM00181)  MACPF (SM00457)  
Conserved Domain (NCBI)ASTN1
DMDM Disease mutations460
Blocks (Seattle)ASTN1
SuperfamilyO14525
Human Protein AtlasENSG00000152092
Peptide AtlasO14525
HPRD09019
IPIIPI00022367   IPI00514985   IPI00478895   IPI00647130   
Protein Interaction databases
DIP (DOE-UCLA)O14525
IntAct (EBI)O14525
FunCoupENSG00000152092
BioGRIDASTN1
STRING (EMBL)ASTN1
ZODIACASTN1
Ontologies - Pathways
QuickGOO14525
Ontology : AmiGOneuron migration  cellular_component  endosome  neuron cell-cell adhesion  locomotory behavior  external side of plasma membrane  integral component of membrane  clathrin-coated vesicle  perikaryon  
Ontology : EGO-EBIneuron migration  cellular_component  endosome  neuron cell-cell adhesion  locomotory behavior  external side of plasma membrane  integral component of membrane  clathrin-coated vesicle  perikaryon  
NDEx NetworkASTN1
Atlas of Cancer Signalling NetworkASTN1
Wikipedia pathwaysASTN1
Orthology - Evolution
OrthoDB460
GeneTree (enSembl)ENSG00000152092
Phylogenetic Trees/Animal Genes : TreeFamASTN1
HOVERGENO14525
HOGENOMO14525
Homologs : HomoloGeneASTN1
Homology/Alignments : Family Browser (UCSC)ASTN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASTN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASTN1
dbVarASTN1
ClinVarASTN1
1000_GenomesASTN1 
Exome Variant ServerASTN1
ExAC (Exome Aggregation Consortium)ASTN1 (select the gene name)
Genetic variants : HAPMAP460
Genomic Variants (DGV)ASTN1 [DGVbeta]
DECIPHERASTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASTN1 
Mutations
ICGC Data PortalASTN1 
TCGA Data PortalASTN1 
Broad Tumor PortalASTN1
OASIS PortalASTN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASTN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASTN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASTN1
DgiDB (Drug Gene Interaction Database)ASTN1
DoCM (Curated mutations)ASTN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASTN1 (select a term)
intoGenASTN1
Cancer3DASTN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600904   
Orphanet
MedgenASTN1
Genetic Testing Registry ASTN1
NextProtO14525 [Medical]
TSGene460
GENETestsASTN1
Target ValidationASTN1
Huge Navigator ASTN1 [HugePedia]
snp3D : Map Gene to Disease460
BioCentury BCIQASTN1
ClinGenASTN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD460
Chemical/Pharm GKB GenePA162376961
Clinical trialASTN1
Miscellaneous
canSAR (ICR)ASTN1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASTN1
EVEXASTN1
GoPubMedASTN1
iHOPASTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:09:48 CEST 2017

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