Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASTN2 (astrotactin 2)

Identity

Other namesbA67K19.1
HGNC (Hugo) ASTN2
LocusID (NCBI) 23245
Location 9q33.1
Location_base_pair Starts at 119187504 and ends at 119449542 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ASTN2   17021
Cards
Entrez_Gene (NCBI)ASTN2  23245  astrotactin 2
GeneCards (Weizmann)ASTN2
Ensembl (Hinxton)ENSG00000148219 [Gene_View]  chr9:119187504-119449542 [Contig_View]  ASTN2 [Vega]
ICGC DataPortalENSG00000148219
AceView (NCBI)ASTN2
Genatlas (Paris)ASTN2
WikiGenes23245
SOURCE (Princeton)NM_001184734 NM_001184735 NM_014010 NM_198186 NM_198187 NM_198188
Genomic and cartography
GoldenPath (UCSC)ASTN2  -  9q33.1   chr9:119187504-119449542 -  9q33.1   [Description]    (hg19-Feb_2009)
EnsemblASTN2 - 9q33.1 [CytoView]
Mapping of homologs : NCBIASTN2 [Mapview]
OMIM612856   
Gene and transcription
Genbank (Entrez)AB014534 AF116574 AI341147 AK024064 AK127350
RefSeq transcript (Entrez)NM_001184734 NM_001184735 NM_014010 NM_198186 NM_198187 NM_198188
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_021409 NT_008470 NW_001839236 NW_001839237 NW_004929366
Consensus coding sequences : CCDS (NCBI)ASTN2
Cluster EST : UnigeneHs.601562 [ NCBI ]
CGAP (NCI)Hs.601562
Alternative Splicing : Fast-db (Paris)GSHG0031104
Alternative Splicing GalleryENSG00000148219
Gene ExpressionASTN2 [ NCBI-GEO ]     ASTN2 [ SEEK ]   ASTN2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75129 (Uniprot)
NextProtO75129  [Medical]
With graphics : InterProO75129
Splice isoforms : SwissVarO75129 (Swissvar)
Domains : Interpro (EBI)Astrotactin    Fibronectin_type3    MACPF   
Related proteins : CluSTrO75129
Domain families : Pfam (Sanger)MACPF (PF01823)   
Domain families : Pfam (NCBI)pfam01823   
Domain families : Smart (EMBL)FN3 (SM00060)  MACPF (SM00457)  
DMDM Disease mutations23245
Blocks (Seattle)O75129
Human Protein AtlasENSG00000148219
Peptide AtlasO75129
HPRD12498
IPIIPI00377078   IPI00514125   IPI00377077   IPI00297431   IPI00413773   IPI00979314   IPI00640838   IPI00305238   
Protein Interaction databases
DIP (DOE-UCLA)O75129
IntAct (EBI)O75129
FunCoupENSG00000148219
BioGRIDASTN2
InParanoidO75129
Interologous Interaction database O75129
IntegromeDBASTN2
STRING (EMBL)ASTN2
Ontologies - Pathways
Ontology : AmiGOendosome  integral component of membrane  cell pole  negative regulation of protein localization to cell surface  
Ontology : EGO-EBIendosome  integral component of membrane  cell pole  negative regulation of protein localization to cell surface  
Protein Interaction DatabaseASTN2
Wikipedia pathwaysASTN2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ASTN2
SNP (GeneSNP Utah)ASTN2
SNP : HGBaseASTN2
Genetic variants : HAPMAPASTN2
1000_GenomesASTN2 
ICGC programENSG00000148219 
CONAN: Copy Number AnalysisASTN2 
Somatic Mutations in Cancer : COSMICASTN2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDASTN2
OMIM612856   
MedgenASTN2
GENETestsASTN2
Disease Genetic AssociationASTN2
Huge Navigator ASTN2 [HugePedia]  ASTN2 [HugeCancerGEM]
Genomic VariantsASTN2  ASTN2 [DGVbeta]
Exome VariantASTN2
dbVarASTN2
ClinVarASTN2
snp3D : Map Gene to Disease23245
General knowledge
Homologs : HomoloGeneASTN2
Homology/Alignments : Family Browser (UCSC)ASTN2
Phylogenetic Trees/Animal Genes : TreeFamASTN2
Chemical/Protein Interactions : CTD23245
Chemical/Pharm GKB GenePA25076
Clinical trialASTN2
Cancer Resource (Charite)ENSG00000148219
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
CoreMineASTN2
iHOPASTN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:33:25 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.