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ASTN2 (astrotactin 2)

Identity

Other namesbA67K19.1
HGNC (Hugo) ASTN2
LocusID (NCBI) 23245
Atlas_Id 717
Location 9q33.1  [Link to chromosome band 9q33]
Location_base_pair Starts at 119187504 and ends at 119449542 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASTN2 (9q33.1) / ARHGDIG (16p13.3)ASTN2 (9q33.1) / ASTN2 (9q33.1)ASTN2 (9q33.1) / DDX21 (10q22.1)
ASTN2 (9q33.1) / LRRC37A5P (9q31.3)ASTN2 (9q33.1) / MFAP4 (17p11.2)ASTN2 (9q33.1) / PDIA2 (16p13.3)
ASTN2 (9q33.1) / PNMT (17q12)ASTN2 (9q33.1) / PTPRG (3p14.2)CNOT2 (12q15) / ASTN2 (9q33.1)
MIR639 (19p13.12) / ASTN2 (9q33.1)NUP188 (9q34.11) / ASTN2 (9q33.1)PAWR (12q21.2) / ASTN2 (9q33.1)
PTBP3 (9q32) / ASTN2 (9q33.1)STRBP (9q33.3) / ASTN2 (9q33.1)ZCCHC7 (9p13.2) / ASTN2 (9q33.1)
ASTN2 9q33.1 / ARHGDIG 16p13.3ASTN2 9q33.1 C9orf29ASTN2 9q33.1 / PNMT 17q12
NUP188 9q34.11 / ASTN2 9q33.1ROD1 ASTN2 9q33.1STRBP 9q33.3 / ASTN2 9q33.1
ZCCHC7 9p13.2 / ASTN2 9q33.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASTN2   17021
Cards
Entrez_Gene (NCBI)ASTN2  23245  astrotactin 2
AliasesbA67K19.1
GeneCards (Weizmann)ASTN2
Ensembl hg19 (Hinxton)ENSG00000148219 [Gene_View]  chr9:119187504-119449542 [Contig_View]  ASTN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148219 [Gene_View]  chr9:119187504-119449542 [Contig_View]  ASTN2 [Vega]
ICGC DataPortalENSG00000148219
TCGA cBioPortalASTN2
AceView (NCBI)ASTN2
Genatlas (Paris)ASTN2
WikiGenes23245
SOURCE (Princeton)ASTN2
Genomic and cartography
GoldenPath hg19 (UCSC)ASTN2  -     chr9:119187504-119449542 -  9q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASTN2  -     9q33.1   [Description]    (hg38-Dec_2013)
EnsemblASTN2 - 9q33.1 [CytoView hg19]  ASTN2 - 9q33.1 [CytoView hg38]
Mapping of homologs : NCBIASTN2 [Mapview hg19]  ASTN2 [Mapview hg38]
OMIM612856   
Gene and transcription
Genbank (Entrez)AB014534 AF116574 AI341147 AK024064 AK127350
RefSeq transcript (Entrez)NM_001184734 NM_001184735 NM_014010 NM_198186 NM_198187 NM_198188
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_021409 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ASTN2
Cluster EST : UnigeneHs.601562 [ NCBI ]
CGAP (NCI)Hs.601562
Alternative Splicing GalleryENSG00000148219
Gene ExpressionASTN2 [ NCBI-GEO ]   ASTN2 [ EBI - ARRAY_EXPRESS ]   ASTN2 [ SEEK ]   ASTN2 [ MEM ]
Gene Expression Viewer (FireBrowse)ASTN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23245
GTEX Portal (Tissue expression)ASTN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75129 (Uniprot)
NextProtO75129  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75129
Splice isoforms : SwissVarO75129 (Swissvar)
PhosPhoSitePlusO75129
Domains : Interpro (EBI)Astrotactin    FN3_dom    MACPF   
Domain families : Pfam (Sanger)MACPF (PF01823)   
Domain families : Pfam (NCBI)pfam01823   
Domain families : Smart (EMBL)FN3 (SM00060)  MACPF (SM00457)  
DMDM Disease mutations23245
Blocks (Seattle)ASTN2
SuperfamilyO75129
Human Protein AtlasENSG00000148219
Peptide AtlasO75129
HPRD12498
IPIIPI00377078   IPI00514125   IPI00377077   IPI00297431   IPI00413773   IPI00979314   IPI00640838   IPI00305238   
Protein Interaction databases
DIP (DOE-UCLA)O75129
IntAct (EBI)O75129
FunCoupENSG00000148219
BioGRIDASTN2
STRING (EMBL)ASTN2
ZODIACASTN2
Ontologies - Pathways
QuickGOO75129
Ontology : AmiGOendosome  integral component of membrane  cell pole  negative regulation of protein localization to cell surface  
Ontology : EGO-EBIendosome  integral component of membrane  cell pole  negative regulation of protein localization to cell surface  
NDEx Network
Atlas of Cancer Signalling NetworkASTN2
Wikipedia pathwaysASTN2
Orthology - Evolution
OrthoDB23245
GeneTree (enSembl)ENSG00000148219
Phylogenetic Trees/Animal Genes : TreeFamASTN2
Homologs : HomoloGeneASTN2
Homology/Alignments : Family Browser (UCSC)ASTN2
Gene fusions - Rearrangements
Fusion: TCGAASTN2 9q33.1 ARHGDIG 16p13.3 GBM
Fusion: TCGAASTN2 9q33.1 C9orf29 BRCA
Fusion: TCGAASTN2 9q33.1 PNMT 17q12 BRCA
Fusion: TCGANUP188 9q34.11 ASTN2 9q33.1 BRCA
Fusion: TCGAROD1 ASTN2 9q33.1 BRCA
Fusion: TCGASTRBP 9q33.3 ASTN2 9q33.1 LUAD
Fusion: TCGAZCCHC7 9p13.2 ASTN2 9q33.1 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerASTN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASTN2
dbVarASTN2
ClinVarASTN2
1000_GenomesASTN2 
Exome Variant ServerASTN2
ExAC (Exome Aggregation Consortium)ASTN2 (select the gene name)
Genetic variants : HAPMAP23245
Genomic Variants (DGV)ASTN2 [DGVbeta]
Mutations
ICGC Data PortalASTN2 
TCGA Data PortalASTN2 
Broad Tumor PortalASTN2
OASIS PortalASTN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASTN2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASTN2
DgiDB (Drug Gene Interaction Database)ASTN2
DoCM (Curated mutations)ASTN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASTN2 (select a term)
intoGenASTN2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:119187504-119449542  ENSG00000148219
CONAN: Copy Number AnalysisASTN2 
Mutations and Diseases : HGMDASTN2
OMIM612856   
MedgenASTN2
Genetic Testing Registry ASTN2
NextProtO75129 [Medical]
TSGene23245
GENETestsASTN2
Huge Navigator ASTN2 [HugePedia]
snp3D : Map Gene to Disease23245
BioCentury BCIQASTN2
ClinGenASTN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23245
Chemical/Pharm GKB GenePA25076
Clinical trialASTN2
Miscellaneous
canSAR (ICR)ASTN2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASTN2
EVEXASTN2
GoPubMedASTN2
iHOPASTN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 9 19:18:30 CEST 2016

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