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ASXL3 (additional sex combs like 3, transcriptional regulator)

Identity

Alias_namesKIAA1713
KIAA1713
additional sex combs like 3 (Drosophila)
Other aliasBRPS
HGNC (Hugo) ASXL3
LocusID (NCBI) 80816
Atlas_Id 55606
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 33578577 and ends at 33751194 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASXL3   29357
Cards
Entrez_Gene (NCBI)ASXL3  80816  additional sex combs like 3, transcriptional regulator
AliasesBRPS; KIAA1713
GeneCards (Weizmann)ASXL3
Ensembl hg19 (Hinxton)ENSG00000141431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141431 [Gene_View]  chr18:33578577-33751194 [Contig_View]  ASXL3 [Vega]
ICGC DataPortalENSG00000141431
TCGA cBioPortalASXL3
AceView (NCBI)ASXL3
Genatlas (Paris)ASXL3
WikiGenes80816
SOURCE (Princeton)ASXL3
Genetics Home Reference (NIH)ASXL3
Genomic and cartography
GoldenPath hg38 (UCSC)ASXL3  -     chr18:33578577-33751194 +  18q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASXL3  -     18q12.1   [Description]    (hg19-Feb_2009)
EnsemblASXL3 - 18q12.1 [CytoView hg19]  ASXL3 - 18q12.1 [CytoView hg38]
Mapping of homologs : NCBIASXL3 [Mapview hg19]  ASXL3 [Mapview hg38]
OMIM615115   615485   
Gene and transcription
Genbank (Entrez)AA447511 AB051500 AK056450 AK091683 AK131454
RefSeq transcript (Entrez)NM_030632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASXL3
Cluster EST : UnigeneHs.464876 [ NCBI ]
CGAP (NCI)Hs.464876
Alternative Splicing GalleryENSG00000141431
Gene ExpressionASXL3 [ NCBI-GEO ]   ASXL3 [ EBI - ARRAY_EXPRESS ]   ASXL3 [ SEEK ]   ASXL3 [ MEM ]
Gene Expression Viewer (FireBrowse)ASXL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80816
GTEX Portal (Tissue expression)ASXL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0F0
Splice isoforms : SwissVarQ9C0F0
PhosPhoSitePlusQ9C0F0
Domains : Interpro (EBI)ASX-like_PHD    ASX/ASX-like    ASXH    ASXL3    HB1/Asxl_HTH   
Domain families : Pfam (Sanger)ASXH (PF13919)    HARE-HTH (PF05066)    PHD_3 (PF13922)   
Domain families : Pfam (NCBI)pfam13919    pfam05066    pfam13922   
Conserved Domain (NCBI)ASXL3
DMDM Disease mutations80816
Blocks (Seattle)ASXL3
SuperfamilyQ9C0F0
Human Protein AtlasENSG00000141431
Peptide AtlasQ9C0F0
IPIIPI00853376   IPI00885069   IPI00885096   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0F0
IntAct (EBI)Q9C0F0
FunCoupENSG00000141431
BioGRIDASXL3
STRING (EMBL)ASXL3
ZODIACASXL3
Ontologies - Pathways
QuickGOQ9C0F0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkASXL3
Atlas of Cancer Signalling NetworkASXL3
Wikipedia pathwaysASXL3
Orthology - Evolution
OrthoDB80816
GeneTree (enSembl)ENSG00000141431
Phylogenetic Trees/Animal Genes : TreeFamASXL3
HOVERGENQ9C0F0
HOGENOMQ9C0F0
Homologs : HomoloGeneASXL3
Homology/Alignments : Family Browser (UCSC)ASXL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASXL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASXL3
dbVarASXL3
ClinVarASXL3
1000_GenomesASXL3 
Exome Variant ServerASXL3
ExAC (Exome Aggregation Consortium)ASXL3 (select the gene name)
Genetic variants : HAPMAP80816
Genomic Variants (DGV)ASXL3 [DGVbeta]
DECIPHERASXL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASXL3 
Mutations
ICGC Data PortalASXL3 
TCGA Data PortalASXL3 
Broad Tumor PortalASXL3
OASIS PortalASXL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASXL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASXL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASXL3
DgiDB (Drug Gene Interaction Database)ASXL3
DoCM (Curated mutations)ASXL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASXL3 (select a term)
intoGenASXL3
Cancer3DASXL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615115    615485   
Orphanet22081   
MedgenASXL3
Genetic Testing Registry ASXL3
NextProtQ9C0F0 [Medical]
TSGene80816
GENETestsASXL3
Target ValidationASXL3
Huge Navigator ASXL3 [HugePedia]
snp3D : Map Gene to Disease80816
BioCentury BCIQASXL3
ClinGenASXL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80816
Chemical/Pharm GKB GenePA162377010
Clinical trialASXL3
Miscellaneous
canSAR (ICR)ASXL3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASXL3
EVEXASXL3
GoPubMedASXL3
iHOPASXL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:42 CEST 2017

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