Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASZ1 (ankyrin repeat, SAM and basic leucine zipper domain containing 1)

Identity

Alias_namesC7orf7
ANKL1
ankyrin-like 1
Alias_symbol (synonym)Orf3
GASZ
ALP1
CT1.19
Other alias
HGNC (Hugo) ASZ1
LocusID (NCBI) 136991
Atlas_Id 60587
Location 7q31.2  [Link to chromosome band 7q31]
Location_base_pair Starts at 117003276 and ends at 117067577 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AFF3 (2q11.2) / ASZ1 (7q31.2)ST7-OT4 (7q31.2) / ASZ1 (7q31.2)ST7 (7q31.2) / ASZ1 (7q31.2)
AFF3 ASZ1ST7OT4 ASZ1ST7 ASZ1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASZ1   1350
Cards
Entrez_Gene (NCBI)ASZ1  136991  ankyrin repeat, SAM and basic leucine zipper domain containing 1
AliasesALP1; ANKL1; C7orf7; CT1.19; 
GASZ; Orf3
GeneCards (Weizmann)ASZ1
Ensembl hg19 (Hinxton)ENSG00000154438 [Gene_View]  chr7:117003276-117067577 [Contig_View]  ASZ1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154438 [Gene_View]  chr7:117003276-117067577 [Contig_View]  ASZ1 [Vega]
ICGC DataPortalENSG00000154438
TCGA cBioPortalASZ1
AceView (NCBI)ASZ1
Genatlas (Paris)ASZ1
WikiGenes136991
SOURCE (Princeton)ASZ1
Genetics Home Reference (NIH)ASZ1
Genomic and cartography
GoldenPath hg19 (UCSC)ASZ1  -     chr7:117003276-117067577 -  7q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASZ1  -     7q31.2   [Description]    (hg38-Dec_2013)
EnsemblASZ1 - 7q31.2 [CytoView hg19]  ASZ1 - 7q31.2 [CytoView hg38]
Mapping of homologs : NCBIASZ1 [Mapview hg19]  ASZ1 [Mapview hg38]
OMIM605797   
Gene and transcription
Genbank (Entrez)AF461259 AK093445 BC028695 BC034963 BC068488
RefSeq transcript (Entrez)NM_001301821 NM_001301822 NM_130768
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ASZ1
Cluster EST : UnigeneHs.352412 [ NCBI ]
CGAP (NCI)Hs.352412
Alternative Splicing GalleryENSG00000154438
Gene ExpressionASZ1 [ NCBI-GEO ]   ASZ1 [ EBI - ARRAY_EXPRESS ]   ASZ1 [ SEEK ]   ASZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136991
GTEX Portal (Tissue expression)ASZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWH4
Splice isoforms : SwissVarQ8WWH4
PhosPhoSitePlusQ8WWH4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SAM/pointed    SAM_2   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam12796    pfam07647   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ASZ1
DMDM Disease mutations136991
Blocks (Seattle)ASZ1
SuperfamilyQ8WWH4
Human Protein AtlasENSG00000154438
Peptide AtlasQ8WWH4
HPRD10677
IPIIPI00103340   IPI00798233   IPI00878415   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWH4
IntAct (EBI)Q8WWH4
FunCoupENSG00000154438
BioGRIDASZ1
STRING (EMBL)ASZ1
ZODIACASZ1
Ontologies - Pathways
QuickGOQ8WWH4
Ontology : AmiGOsignal transducer activity  cytoplasm  male meiosis  signal transduction  multicellular organismal development  spermatogenesis  gene expression  cell differentiation  gene silencing by RNA  piRNA metabolic process  piRNA metabolic process  DNA methylation involved in gamete generation  pi-body  
Ontology : EGO-EBIsignal transducer activity  cytoplasm  male meiosis  signal transduction  multicellular organismal development  spermatogenesis  gene expression  cell differentiation  gene silencing by RNA  piRNA metabolic process  piRNA metabolic process  DNA methylation involved in gamete generation  pi-body  
NDEx NetworkASZ1
Atlas of Cancer Signalling NetworkASZ1
Wikipedia pathwaysASZ1
Orthology - Evolution
OrthoDB136991
GeneTree (enSembl)ENSG00000154438
Phylogenetic Trees/Animal Genes : TreeFamASZ1
HOVERGENQ8WWH4
HOGENOMQ8WWH4
Homologs : HomoloGeneASZ1
Homology/Alignments : Family Browser (UCSC)ASZ1
Gene fusions - Rearrangements
Fusion: TCGAAFF3 ASZ1
Fusion: TCGAST7OT4 ASZ1
Fusion: TCGAST7 ASZ1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASZ1
dbVarASZ1
ClinVarASZ1
1000_GenomesASZ1 
Exome Variant ServerASZ1
ExAC (Exome Aggregation Consortium)ASZ1 (select the gene name)
Genetic variants : HAPMAP136991
Genomic Variants (DGV)ASZ1 [DGVbeta]
DECIPHER (Syndromes)7:117003276-117067577  ENSG00000154438
CONAN: Copy Number AnalysisASZ1 
Mutations
ICGC Data PortalASZ1 
TCGA Data PortalASZ1 
Broad Tumor PortalASZ1
OASIS PortalASZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASZ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASZ1
DgiDB (Drug Gene Interaction Database)ASZ1
DoCM (Curated mutations)ASZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASZ1 (select a term)
intoGenASZ1
Cancer3DASZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605797   
Orphanet
MedgenASZ1
Genetic Testing Registry ASZ1
NextProtQ8WWH4 [Medical]
TSGene136991
GENETestsASZ1
Huge Navigator ASZ1 [HugePedia]
snp3D : Map Gene to Disease136991
BioCentury BCIQASZ1
ClinGenASZ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136991
Chemical/Pharm GKB GenePA25950
Clinical trialASZ1
Miscellaneous
canSAR (ICR)ASZ1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASZ1
EVEXASZ1
GoPubMedASZ1
iHOPASZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:55:16 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.