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ATAD1 (ATPase family AAA domain containing 1)

Identity

Alias (NCBI)AFDC1
FNP001
HKPX4
Msp1
THORASE
hATAD1
HGNC (Hugo) ATAD1
HGNC Alias symbFLJ14600
LocusID (NCBI) 84896
Atlas_Id 60588
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 87751512 and ends at 87818231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANK3 (10q21.2) / ATAD1 (10q23.31)ATAD1 (10q23.31) / JMJD1C (10q21.3)ATRNL1 (10q25.3) / ATAD1 (10q23.31)
BTBD9 (6p21.2) / ATAD1 (10q23.31)HNRNPF (10q11.21) / ATAD1 (10q23.31)HNRNPH3 (10q21.3) / ATAD1 (10q23.31)
PAPSS2 (10q23.2) / ATAD1 (10q23.31)STAMBPL1 (10q23.31) / ATAD1 (10q23.31)SYN1 (Xp11.23) / ATAD1 (10q23.31)
VPS26A (10q22.1) / ATAD1 (10q23.31)BTBD9 ATAD1HNRNPF ATAD1
ANK3 ATAD1STAMBPL1 ATAD1PAPSS2 ATAD1
HNRNPH3 ATAD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ATAD1   25903
Cards
Entrez_Gene (NCBI)ATAD1    ATPase family AAA domain containing 1
AliasesAFDC1; FNP001; HKPX4; Msp1; 
THORASE; hATAD1
GeneCards (Weizmann)ATAD1
Ensembl hg19 (Hinxton)ENSG00000138138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138138 [Gene_View]  ENSG00000138138 [Sequence]  chr10:87751512-87818231 [Contig_View]  ATAD1 [Vega]
ICGC DataPortalENSG00000138138
TCGA cBioPortalATAD1
AceView (NCBI)ATAD1
Genatlas (Paris)ATAD1
SOURCE (Princeton)ATAD1
Genetics Home Reference (NIH)ATAD1
Genomic and cartography
GoldenPath hg38 (UCSC)ATAD1  -     chr10:87751512-87818231 -  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAD1  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathATAD1 - 10q23.31 [CytoView hg19]  ATAD1 - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000138138
Genome Data Viewer NCBIATAD1 [Mapview hg19]  
OMIM614452   618011   
Gene and transcription
Genbank (Entrez)AF361493 AK027506 AK075223 AK304297 AL834370
RefSeq transcript (Entrez)NM_001321967 NM_001321968 NM_001321969 NM_032810
Consensus coding sequences : CCDS (NCBI)ATAD1
Gene ExpressionATAD1 [ NCBI-GEO ]   ATAD1 [ EBI - ARRAY_EXPRESS ]   ATAD1 [ SEEK ]   ATAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD1 [ Firebrowse - Broad ]
GenevisibleExpression of ATAD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84896
GTEX Portal (Tissue expression)ATAD1
Human Protein AtlasENSG00000138138-ATAD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBU5
PhosPhoSitePlusQ8NBU5
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    AAA_lid_3    ATPase_AAA_core    ATPase_AAA_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    AAA_lid_3 (PF17862)   
Domain families : Pfam (NCBI)pfam00004    pfam17862   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD1
SuperfamilyQ8NBU5
AlphaFold pdb e-kbQ8NBU5   
Human Protein Atlas [tissue]ENSG00000138138-ATAD1 [tissue]
HPRD12499
Protein Interaction databases
DIP (DOE-UCLA)Q8NBU5
IntAct (EBI)Q8NBU5
BioGRIDATAD1
STRING (EMBL)ATAD1
ZODIACATAD1
Ontologies - Pathways
QuickGOQ8NBU5
Ontology : AmiGOpositive regulation of receptor internalization  ATP binding  mitochondrial outer membrane  peroxisomal membrane  peroxisomal membrane  peroxisomal membrane  cytosol  learning  memory  membrane  integral component of membrane  protein import into peroxisome membrane  postsynaptic membrane  negative regulation of synaptic transmission, glutamatergic  transmembrane protein dislocase activity  extraction of mislocalized protein from mitochondrial outer membrane  ATP hydrolysis activity  
Ontology : EGO-EBIpositive regulation of receptor internalization  ATP binding  mitochondrial outer membrane  peroxisomal membrane  peroxisomal membrane  peroxisomal membrane  cytosol  learning  memory  membrane  integral component of membrane  protein import into peroxisome membrane  postsynaptic membrane  negative regulation of synaptic transmission, glutamatergic  transmembrane protein dislocase activity  extraction of mislocalized protein from mitochondrial outer membrane  ATP hydrolysis activity  
NDEx NetworkATAD1
Atlas of Cancer Signalling NetworkATAD1
Wikipedia pathwaysATAD1
Orthology - Evolution
OrthoDB84896
GeneTree (enSembl)ENSG00000138138
Phylogenetic Trees/Animal Genes : TreeFamATAD1
Homologs : HomoloGeneATAD1
Homology/Alignments : Family Browser (UCSC)ATAD1
Gene fusions - Rearrangements
Fusion : QuiverATAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD1
dbVarATAD1
ClinVarATAD1
MonarchATAD1
1000_GenomesATAD1 
Exome Variant ServerATAD1
GNOMAD BrowserENSG00000138138
Varsome BrowserATAD1
ACMGATAD1 variants
VarityQ8NBU5
Genomic Variants (DGV)ATAD1 [DGVbeta]
DECIPHERATAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAD1 
Mutations
ICGC Data PortalATAD1 
TCGA Data PortalATAD1 
Broad Tumor PortalATAD1
OASIS PortalATAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATAD1
Mutations and Diseases : HGMDATAD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATAD1
DgiDB (Drug Gene Interaction Database)ATAD1
DoCM (Curated mutations)ATAD1
CIViC (Clinical Interpretations of Variants in Cancer)ATAD1
Cancer3DATAD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614452    618011   
Orphanet
DisGeNETATAD1
MedgenATAD1
Genetic Testing Registry ATAD1
NextProtQ8NBU5 [Medical]
GENETestsATAD1
Target ValidationATAD1
Huge Navigator ATAD1 [HugePedia]
ClinGenATAD1
Clinical trials, drugs, therapy
MyCancerGenomeATAD1
Protein Interactions : CTDATAD1
Pharm GKB GenePA134914940
PharosQ8NBU5
Clinical trialATAD1
Miscellaneous
canSAR (ICR)ATAD1
HarmonizomeATAD1
DataMed IndexATAD1
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:42:49 CEST 2021

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