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ATAD1 (ATPase family, AAA domain containing 1)

Identity

Alias_symbol (synonym)FLJ14600
Other aliasAFDC1
FNP001
THORASE
HGNC (Hugo) ATAD1
LocusID (NCBI) 84896
Atlas_Id 60588
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 87751512 and ends at 87818231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANK3 (10q21.2) / ATAD1 (10q23.31)ATAD1 (10q23.31) / JMJD1C (10q21.3)ATRNL1 (10q25.3) / ATAD1 (10q23.31)
BTBD9 (6p21.2) / ATAD1 (10q23.31)HNRNPF (10q11.21) / ATAD1 (10q23.31)HNRNPH3 (10q21.3) / ATAD1 (10q23.31)
PAPSS2 (10q23.2) / ATAD1 (10q23.31)STAMBPL1 (10q23.31) / ATAD1 (10q23.31)SYN1 (Xp11.23) / ATAD1 (10q23.31)
VPS26A (10q22.1) / ATAD1 (10q23.31)BTBD9 ATAD1HNRNPF ATAD1
ANK3 ATAD1STAMBPL1 ATAD1PAPSS2 ATAD1
HNRNPH3 ATAD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATAD1   25903
Cards
Entrez_Gene (NCBI)ATAD1  84896  ATPase family, AAA domain containing 1
AliasesAFDC1; FNP001; THORASE
GeneCards (Weizmann)ATAD1
Ensembl hg19 (Hinxton)ENSG00000138138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138138 [Gene_View]  chr10:87751512-87818231 [Contig_View]  ATAD1 [Vega]
ICGC DataPortalENSG00000138138
TCGA cBioPortalATAD1
AceView (NCBI)ATAD1
Genatlas (Paris)ATAD1
WikiGenes84896
SOURCE (Princeton)ATAD1
Genetics Home Reference (NIH)ATAD1
Genomic and cartography
GoldenPath hg38 (UCSC)ATAD1  -     chr10:87751512-87818231 -  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAD1  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblATAD1 - 10q23.31 [CytoView hg19]  ATAD1 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIATAD1 [Mapview hg19]  ATAD1 [Mapview hg38]
OMIM614452   
Gene and transcription
Genbank (Entrez)AF361493 AK027506 AK075223 AK304297 AL834370
RefSeq transcript (Entrez)NM_001321967 NM_001321968 NM_001321969 NM_032810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATAD1
Cluster EST : UnigeneHs.435948 [ NCBI ]
CGAP (NCI)Hs.435948
Alternative Splicing GalleryENSG00000138138
Gene ExpressionATAD1 [ NCBI-GEO ]   ATAD1 [ EBI - ARRAY_EXPRESS ]   ATAD1 [ SEEK ]   ATAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84896
GTEX Portal (Tissue expression)ATAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBU5
Splice isoforms : SwissVarQ8NBU5
Catalytic activity : Enzyme3.6.1.3 [ Enzyme-Expasy ]   3.6.1.33.6.1.3 [ IntEnz-EBI ]   3.6.1.3 [ BRENDA ]   3.6.1.3 [ KEGG ]   
PhosPhoSitePlusQ8NBU5
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD1
DMDM Disease mutations84896
Blocks (Seattle)ATAD1
SuperfamilyQ8NBU5
Human Protein AtlasENSG00000138138
Peptide AtlasQ8NBU5
HPRD12499
IPIIPI00171445   IPI00929553   IPI00910210   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBU5
IntAct (EBI)Q8NBU5
FunCoupENSG00000138138
BioGRIDATAD1
STRING (EMBL)ATAD1
ZODIACATAD1
Ontologies - Pathways
QuickGOQ8NBU5
Ontology : AmiGOpositive regulation of receptor internalization  ATP binding  nucleus  mitochondrion  peroxisomal membrane  learning  memory  microtubule-severing ATPase activity  membrane  ATPase activity  cell junction  cytoplasmic microtubule organization  postsynaptic membrane  negative regulation of synaptic transmission, glutamatergic  
Ontology : EGO-EBIpositive regulation of receptor internalization  ATP binding  nucleus  mitochondrion  peroxisomal membrane  learning  memory  microtubule-severing ATPase activity  membrane  ATPase activity  cell junction  cytoplasmic microtubule organization  postsynaptic membrane  negative regulation of synaptic transmission, glutamatergic  
NDEx NetworkATAD1
Atlas of Cancer Signalling NetworkATAD1
Wikipedia pathwaysATAD1
Orthology - Evolution
OrthoDB84896
GeneTree (enSembl)ENSG00000138138
Phylogenetic Trees/Animal Genes : TreeFamATAD1
HOVERGENQ8NBU5
HOGENOMQ8NBU5
Homologs : HomoloGeneATAD1
Homology/Alignments : Family Browser (UCSC)ATAD1
Gene fusions - Rearrangements
Fusion: TCGABTBD9 ATAD1
Fusion: TCGAHNRNPF ATAD1
Fusion: TCGAANK3 ATAD1
Fusion: TCGASTAMBPL1 ATAD1
Fusion: TCGAPAPSS2 ATAD1
Fusion: TCGAHNRNPH3 ATAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD1
dbVarATAD1
ClinVarATAD1
1000_GenomesATAD1 
Exome Variant ServerATAD1
ExAC (Exome Aggregation Consortium)ATAD1 (select the gene name)
Genetic variants : HAPMAP84896
Genomic Variants (DGV)ATAD1 [DGVbeta]
DECIPHERATAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAD1 
Mutations
ICGC Data PortalATAD1 
TCGA Data PortalATAD1 
Broad Tumor PortalATAD1
OASIS PortalATAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATAD1
DgiDB (Drug Gene Interaction Database)ATAD1
DoCM (Curated mutations)ATAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATAD1 (select a term)
intoGenATAD1
Cancer3DATAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614452   
Orphanet
MedgenATAD1
Genetic Testing Registry ATAD1
NextProtQ8NBU5 [Medical]
TSGene84896
GENETestsATAD1
Target ValidationATAD1
Huge Navigator ATAD1 [HugePedia]
snp3D : Map Gene to Disease84896
BioCentury BCIQATAD1
ClinGenATAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84896
Chemical/Pharm GKB GenePA134914940
Clinical trialATAD1
Miscellaneous
canSAR (ICR)ATAD1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATAD1
EVEXATAD1
GoPubMedATAD1
iHOPATAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:56 CEST 2017

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