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ATAD3A (ATPase family, AAA domain containing 3A)

Identity

Alias_symbol (synonym)FLJ10709
Other aliasHAYOS
HGNC (Hugo) ATAD3A
LocusID (NCBI) 55210
Atlas_Id 51672
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1512143 and ends at 1534687 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATAD3A (1p36.33) / RUVBL1 (3q21.3)USP35 (11q14.1) / ATAD3A (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATAD3A   25567
Cards
Entrez_Gene (NCBI)ATAD3A  55210  ATPase family, AAA domain containing 3A
AliasesHAYOS
GeneCards (Weizmann)ATAD3A
Ensembl hg19 (Hinxton)ENSG00000197785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197785 [Gene_View]  chr1:1512143-1534687 [Contig_View]  ATAD3A [Vega]
ICGC DataPortalENSG00000197785
TCGA cBioPortalATAD3A
AceView (NCBI)ATAD3A
Genatlas (Paris)ATAD3A
WikiGenes55210
SOURCE (Princeton)ATAD3A
Genetics Home Reference (NIH)ATAD3A
Genomic and cartography
GoldenPath hg38 (UCSC)ATAD3A  -     chr1:1512143-1534687 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAD3A  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblATAD3A - 1p36.33 [CytoView hg19]  ATAD3A - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIATAD3A [Mapview hg19]  ATAD3A [Mapview hg38]
OMIM612316   617183   
Gene and transcription
Genbank (Entrez)AK001571 AK025865 AK056099 AK091144 AK092833
RefSeq transcript (Entrez)NM_001170535 NM_001170536 NM_018188
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATAD3A
Cluster EST : UnigeneHs.23413 [ NCBI ]
CGAP (NCI)Hs.23413
Alternative Splicing GalleryENSG00000197785
Gene ExpressionATAD3A [ NCBI-GEO ]   ATAD3A [ EBI - ARRAY_EXPRESS ]   ATAD3A [ SEEK ]   ATAD3A [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55210
GTEX Portal (Tissue expression)ATAD3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVI7
Splice isoforms : SwissVarQ9NVI7
PhosPhoSitePlusQ9NVI7
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    DUF3523    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    DUF3523 (PF12037)   
Domain families : Pfam (NCBI)pfam00004    pfam12037   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD3A
DMDM Disease mutations55210
Blocks (Seattle)ATAD3A
SuperfamilyQ9NVI7
Human Protein AtlasENSG00000197785
Peptide AtlasQ9NVI7
HPRD12500
IPIIPI00643435   IPI00295992   IPI00455487   IPI00646144   IPI00644611   IPI00514286   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVI7
IntAct (EBI)Q9NVI7
FunCoupENSG00000197785
BioGRIDATAD3A
STRING (EMBL)ATAD3A
ZODIACATAD3A
Ontologies - Pathways
QuickGOQ9NVI7
Ontology : AmiGOATP binding  mitochondrion  mitochondrial inner membrane  integral component of membrane  cell growth  mitochondrial nucleoid  negative regulation of apoptotic process  
Ontology : EGO-EBIATP binding  mitochondrion  mitochondrial inner membrane  integral component of membrane  cell growth  mitochondrial nucleoid  negative regulation of apoptotic process  
NDEx NetworkATAD3A
Atlas of Cancer Signalling NetworkATAD3A
Wikipedia pathwaysATAD3A
Orthology - Evolution
OrthoDB55210
GeneTree (enSembl)ENSG00000197785
Phylogenetic Trees/Animal Genes : TreeFamATAD3A
HOVERGENQ9NVI7
HOGENOMQ9NVI7
Homologs : HomoloGeneATAD3A
Homology/Alignments : Family Browser (UCSC)ATAD3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD3A
dbVarATAD3A
ClinVarATAD3A
1000_GenomesATAD3A 
Exome Variant ServerATAD3A
ExAC (Exome Aggregation Consortium)ATAD3A (select the gene name)
Genetic variants : HAPMAP55210
Genomic Variants (DGV)ATAD3A [DGVbeta]
DECIPHERATAD3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAD3A 
Mutations
ICGC Data PortalATAD3A 
TCGA Data PortalATAD3A 
Broad Tumor PortalATAD3A
OASIS PortalATAD3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATAD3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATAD3A
DgiDB (Drug Gene Interaction Database)ATAD3A
DoCM (Curated mutations)ATAD3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATAD3A (select a term)
intoGenATAD3A
Cancer3DATAD3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612316    617183   
Orphanet
MedgenATAD3A
Genetic Testing Registry ATAD3A
NextProtQ9NVI7 [Medical]
TSGene55210
GENETestsATAD3A
Target ValidationATAD3A
Huge Navigator ATAD3A [HugePedia]
snp3D : Map Gene to Disease55210
BioCentury BCIQATAD3A
ClinGenATAD3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55210
Chemical/Pharm GKB GenePA134872099
Clinical trialATAD3A
Miscellaneous
canSAR (ICR)ATAD3A (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATAD3A
EVEXATAD3A
GoPubMedATAD3A
iHOPATAD3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:43 CEST 2017

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