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ATAD3B (ATPase family AAA domain containing 3B)

Identity

Alias (NCBI)AAA-TOB3
TOB3
HGNC (Hugo) ATAD3B
HGNC Alias symbTOB3
KIAA1273
LocusID (NCBI) 83858
Atlas_Id 52623
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1471765 and ends at 1497848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
USP35 (11q14.1) / ATAD3B (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)ATAD3B   24007
Cards
Entrez_Gene (NCBI)ATAD3B    ATPase family AAA domain containing 3B
AliasesAAA-TOB3; TOB3
GeneCards (Weizmann)ATAD3B
Ensembl hg19 (Hinxton)ENSG00000160072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160072 [Gene_View]  ENSG00000160072 [Sequence]  chr1:1471765-1497848 [Contig_View]  ATAD3B [Vega]
ICGC DataPortalENSG00000160072
TCGA cBioPortalATAD3B
AceView (NCBI)ATAD3B
Genatlas (Paris)ATAD3B
SOURCE (Princeton)ATAD3B
Genetics Home Reference (NIH)ATAD3B
Genomic and cartography
GoldenPath hg38 (UCSC)ATAD3B  -     chr1:1471765-1497848 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAD3B  -     1p36.33   [Description]    (hg19-Feb_2009)
GoldenPathATAD3B - 1p36.33 [CytoView hg19]  ATAD3B - 1p36.33 [CytoView hg38]
ImmunoBaseENSG00000160072
Genome Data Viewer NCBIATAD3B [Mapview hg19]  
OMIM612317   
Gene and transcription
Genbank (Entrez)AB033099 AK024028 AK097309 AK127857 AK128357
RefSeq transcript (Entrez)NM_001317238 NM_031921
Consensus coding sequences : CCDS (NCBI)ATAD3B
Gene ExpressionATAD3B [ NCBI-GEO ]   ATAD3B [ EBI - ARRAY_EXPRESS ]   ATAD3B [ SEEK ]   ATAD3B [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD3B [ Firebrowse - Broad ]
GenevisibleExpression of ATAD3B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83858
GTEX Portal (Tissue expression)ATAD3B
Human Protein AtlasENSG00000160072-ATAD3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9A4
PhosPhoSitePlusQ5T9A4
Domains : Interpro (EBI)AAA+_ATPase    ATAD3    ATPase_AAA_core    DUF3523    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    DUF3523 (PF12037)   
Domain families : Pfam (NCBI)pfam00004    pfam12037   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD3B
SuperfamilyQ5T9A4
AlphaFold pdb e-kbQ5T9A4   
Human Protein Atlas [tissue]ENSG00000160072-ATAD3B [tissue]
HPRD10679
Protein Interaction databases
DIP (DOE-UCLA)Q5T9A4
IntAct (EBI)Q5T9A4
BioGRIDATAD3B
STRING (EMBL)ATAD3B
ZODIACATAD3B
Ontologies - Pathways
QuickGOQ5T9A4
Ontology : AmiGOATP binding  mitochondrion  mitochondrion  mitochondrial inner membrane  plasma membrane  mitochondrion organization  zinc ion binding  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
Ontology : EGO-EBIATP binding  mitochondrion  mitochondrion  mitochondrial inner membrane  plasma membrane  mitochondrion organization  zinc ion binding  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
NDEx NetworkATAD3B
Atlas of Cancer Signalling NetworkATAD3B
Wikipedia pathwaysATAD3B
Orthology - Evolution
OrthoDB83858
GeneTree (enSembl)ENSG00000160072
Phylogenetic Trees/Animal Genes : TreeFamATAD3B
Homologs : HomoloGeneATAD3B
Homology/Alignments : Family Browser (UCSC)ATAD3B
Gene fusions - Rearrangements
Fusion : QuiverATAD3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD3B
dbVarATAD3B
ClinVarATAD3B
MonarchATAD3B
1000_GenomesATAD3B 
Exome Variant ServerATAD3B
GNOMAD BrowserENSG00000160072
Varsome BrowserATAD3B
ACMGATAD3B variants
VarityQ5T9A4
Genomic Variants (DGV)ATAD3B [DGVbeta]
DECIPHERATAD3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAD3B 
Mutations
ICGC Data PortalATAD3B 
TCGA Data PortalATAD3B 
Broad Tumor PortalATAD3B
OASIS PortalATAD3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD3B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATAD3B
Mutations and Diseases : HGMDATAD3B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATAD3B
DgiDB (Drug Gene Interaction Database)ATAD3B
DoCM (Curated mutations)ATAD3B
CIViC (Clinical Interpretations of Variants in Cancer)ATAD3B
Cancer3DATAD3B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612317   
Orphanet
DisGeNETATAD3B
MedgenATAD3B
Genetic Testing Registry ATAD3B
NextProtQ5T9A4 [Medical]
GENETestsATAD3B
Target ValidationATAD3B
Huge Navigator ATAD3B [HugePedia]
ClinGenATAD3B
Clinical trials, drugs, therapy
MyCancerGenomeATAD3B
Protein Interactions : CTDATAD3B
Pharm GKB GenePA134993325
PharosQ5T9A4
Clinical trialATAD3B
Miscellaneous
canSAR (ICR)ATAD3B
HarmonizomeATAD3B
DataMed IndexATAD3B
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATAD3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:23 CEST 2021
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