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ATAD3B (ATPase family, AAA domain containing 3B)

Identity

Alias_symbol (synonym)TOB3
KIAA1273
Other aliasAAA-TOB3
HGNC (Hugo) ATAD3B
LocusID (NCBI) 83858
Atlas_Id 52623
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1478115 and ends at 1496204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		USP35 (11q14.1) / ATAD3B (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATAD3B   24007
Cards
Entrez_Gene (NCBI)ATAD3B  83858  ATPase family, AAA domain containing 3B
AliasesAAA-TOB3; TOB3
GeneCards (Weizmann)ATAD3B
Ensembl hg19 (Hinxton)ENSG00000160072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160072 [Gene_View]  chr1:1478115-1496204 [Contig_View]  ATAD3B [Vega]
ICGC DataPortalENSG00000160072
TCGA cBioPortalATAD3B
AceView (NCBI)ATAD3B
Genatlas (Paris)ATAD3B
WikiGenes83858
SOURCE (Princeton)ATAD3B
Genetics Home Reference (NIH)ATAD3B
Genomic and cartography
GoldenPath hg38 (UCSC)ATAD3B  -     chr1:1478115-1496204 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAD3B  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblATAD3B - 1p36.33 [CytoView hg19]  ATAD3B - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIATAD3B [Mapview hg19]  ATAD3B [Mapview hg38]
OMIM612317   
Gene and transcription
Genbank (Entrez)AB033099 AK024028 AK097309 AK127857 AK128357
RefSeq transcript (Entrez)NM_001317238 NM_031921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATAD3B
Cluster EST : UnigeneHs.729021 [ NCBI ]
CGAP (NCI)Hs.729021
Alternative Splicing GalleryENSG00000160072
Gene ExpressionATAD3B [ NCBI-GEO ]   ATAD3B [ EBI - ARRAY_EXPRESS ]   ATAD3B [ SEEK ]   ATAD3B [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83858
GTEX Portal (Tissue expression)ATAD3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9A4
Splice isoforms : SwissVarQ5T9A4
PhosPhoSitePlusQ5T9A4
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    DUF3523    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    DUF3523 (PF12037)   
Domain families : Pfam (NCBI)pfam00004    pfam12037   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD3B
DMDM Disease mutations83858
Blocks (Seattle)ATAD3B
SuperfamilyQ5T9A4
Human Protein AtlasENSG00000160072
Peptide AtlasQ5T9A4
HPRD10679
IPIIPI00306048   IPI00443780   IPI00178879   IPI00744833   IPI00844009   IPI00384123   IPI00045921   
Protein Interaction databases
DIP (DOE-UCLA)Q5T9A4
IntAct (EBI)Q5T9A4
FunCoupENSG00000160072
BioGRIDATAD3B
STRING (EMBL)ATAD3B
ZODIACATAD3B
Ontologies - Pathways
QuickGOQ5T9A4
Ontology : AmiGOATP binding  mitochondrion  mitochondrial inner membrane  plasma membrane  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
Ontology : EGO-EBIATP binding  mitochondrion  mitochondrial inner membrane  plasma membrane  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
NDEx NetworkATAD3B
Atlas of Cancer Signalling NetworkATAD3B
Wikipedia pathwaysATAD3B
Orthology - Evolution
OrthoDB83858
GeneTree (enSembl)ENSG00000160072
Phylogenetic Trees/Animal Genes : TreeFamATAD3B
HOVERGENQ5T9A4
HOGENOMQ5T9A4
Homologs : HomoloGeneATAD3B
Homology/Alignments : Family Browser (UCSC)ATAD3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD3B
dbVarATAD3B
ClinVarATAD3B
1000_GenomesATAD3B 
Exome Variant ServerATAD3B
ExAC (Exome Aggregation Consortium)ATAD3B (select the gene name)
Genetic variants : HAPMAP83858
Genomic Variants (DGV)ATAD3B [DGVbeta]
DECIPHERATAD3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAD3B 
Mutations
ICGC Data PortalATAD3B 
TCGA Data PortalATAD3B 
Broad Tumor PortalATAD3B
OASIS PortalATAD3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATAD3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATAD3B
DgiDB (Drug Gene Interaction Database)ATAD3B
DoCM (Curated mutations)ATAD3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATAD3B (select a term)
intoGenATAD3B
Cancer3DATAD3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612317   
Orphanet
MedgenATAD3B
Genetic Testing Registry ATAD3B
NextProtQ5T9A4 [Medical]
TSGene83858
GENETestsATAD3B
Target ValidationATAD3B
Huge Navigator ATAD3B [HugePedia]
snp3D : Map Gene to Disease83858
BioCentury BCIQATAD3B
ClinGenATAD3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83858
Chemical/Pharm GKB GenePA134993325
Clinical trialATAD3B
Miscellaneous
canSAR (ICR)ATAD3B (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATAD3B
EVEXATAD3B
GoPubMedATAD3B
iHOPATAD3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:43 CEST 2017
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