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ATAD3C (ATPase family, AAA domain containing 3C)

Identity

Alias_symbol (synonym)FLJ34599
Other alias-
HGNC (Hugo) ATAD3C
LocusID (NCBI) 219293
Atlas_Id 52624
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1449689 and ends at 1470158 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATAD3C   32151
Cards
Entrez_Gene (NCBI)ATAD3C  219293  ATPase family, AAA domain containing 3C
Aliases
GeneCards (Weizmann)ATAD3C
Ensembl hg19 (Hinxton)ENSG00000215915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215915 [Gene_View]  chr1:1449689-1470158 [Contig_View]  ATAD3C [Vega]
ICGC DataPortalENSG00000215915
TCGA cBioPortalATAD3C
AceView (NCBI)ATAD3C
Genatlas (Paris)ATAD3C
WikiGenes219293
SOURCE (Princeton)ATAD3C
Genetics Home Reference (NIH)ATAD3C
Genomic and cartography
GoldenPath hg38 (UCSC)ATAD3C  -     chr1:1449689-1470158 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAD3C  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblATAD3C - 1p36.33 [CytoView hg19]  ATAD3C - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIATAD3C [Mapview hg19]  ATAD3C [Mapview hg38]
OMIM617227   
Gene and transcription
Genbank (Entrez)AK074653 AK091918 AK094502 BC101211 BC101212
RefSeq transcript (Entrez)NM_001039211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATAD3C
Cluster EST : UnigeneHs.724767 [ NCBI ]
CGAP (NCI)Hs.724767
Alternative Splicing GalleryENSG00000215915
Gene ExpressionATAD3C [ NCBI-GEO ]   ATAD3C [ EBI - ARRAY_EXPRESS ]   ATAD3C [ SEEK ]   ATAD3C [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219293
GTEX Portal (Tissue expression)ATAD3C
Human Protein AtlasENSG00000215915-ATAD3C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2N8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2N8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2N8
Splice isoforms : SwissVarQ5T2N8
PhosPhoSitePlusQ5T2N8
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    DUF3523    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    DUF3523 (PF12037)   
Domain families : Pfam (NCBI)pfam00004    pfam12037   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD3C
DMDM Disease mutations219293
Blocks (Seattle)ATAD3C
SuperfamilyQ5T2N8
Human Protein Atlas [tissue]ENSG00000215915-ATAD3C [tissue]
Peptide AtlasQ5T2N8
HPRD13426
IPIIPI00513768   IPI00872864   
Protein Interaction databases
DIP (DOE-UCLA)Q5T2N8
IntAct (EBI)Q5T2N8
FunCoupENSG00000215915
BioGRIDATAD3C
STRING (EMBL)ATAD3C
ZODIACATAD3C
Ontologies - Pathways
QuickGOQ5T2N8
Ontology : AmiGOATP binding  mitochondrion  
Ontology : EGO-EBIATP binding  mitochondrion  
NDEx NetworkATAD3C
Atlas of Cancer Signalling NetworkATAD3C
Wikipedia pathwaysATAD3C
Orthology - Evolution
OrthoDB219293
GeneTree (enSembl)ENSG00000215915
Phylogenetic Trees/Animal Genes : TreeFamATAD3C
HOVERGENQ5T2N8
HOGENOMQ5T2N8
Homologs : HomoloGeneATAD3C
Homology/Alignments : Family Browser (UCSC)ATAD3C
Gene fusions - Rearrangements
Tumor Fusion PortalATAD3C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD3C
dbVarATAD3C
ClinVarATAD3C
1000_GenomesATAD3C 
Exome Variant ServerATAD3C
ExAC (Exome Aggregation Consortium)ENSG00000215915
GNOMAD BrowserENSG00000215915
Genetic variants : HAPMAP219293
Genomic Variants (DGV)ATAD3C [DGVbeta]
DECIPHERATAD3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAD3C 
Mutations
ICGC Data PortalATAD3C 
TCGA Data PortalATAD3C 
Broad Tumor PortalATAD3C
OASIS PortalATAD3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATAD3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATAD3C
DgiDB (Drug Gene Interaction Database)ATAD3C
DoCM (Curated mutations)ATAD3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATAD3C (select a term)
intoGenATAD3C
Cancer3DATAD3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617227   
Orphanet
DisGeNETATAD3C
MedgenATAD3C
Genetic Testing Registry ATAD3C
NextProtQ5T2N8 [Medical]
TSGene219293
GENETestsATAD3C
Target ValidationATAD3C
Huge Navigator ATAD3C [HugePedia]
snp3D : Map Gene to Disease219293
BioCentury BCIQATAD3C
ClinGenATAD3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219293
Chemical/Pharm GKB GenePA142672578
Clinical trialATAD3C
Miscellaneous
canSAR (ICR)ATAD3C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATAD3C
EVEXATAD3C
GoPubMedATAD3C
iHOPATAD3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:04:02 CET 2017

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