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ATAD5 (ATPase family, AAA domain containing 5)

Identity

Alias_namesC17orf41
chromosome 17 open reading frame 41
Alias_symbol (synonym)FLJ12735
FRAG1
ELG1
Other alias
HGNC (Hugo) ATAD5
LocusID (NCBI) 79915
Atlas_Id 52556
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29158988 and ends at 29222883 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATAD5 (17q11.2) / EFCAB5 (17q11.2)ATAD5 (17q11.2) / MN1 (22q12.1)ATAD5 (17q11.2) / PTP4A1 (6q12)
ATAD5 (17q11.2) / SIPA1L3 (19q13.13)NF1 (17q11.2) / ATAD5 (17q11.2)SRP19 (5q22.2) / ATAD5 (17q11.2)
ATAD5 17q11.2 / EFCAB5 17q11.2ATAD5 17q11.2 / PTP4A1 6q12ATAD5 17q11.2 / SIPA1L3 19q13.13
NF1 17q11.2 / ATAD5 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATAD5   25752
Cards
Entrez_Gene (NCBI)ATAD5  79915  ATPase family, AAA domain containing 5
AliasesC17orf41; ELG1; FRAG1
GeneCards (Weizmann)ATAD5
Ensembl hg19 (Hinxton)ENSG00000176208 [Gene_View]  chr17:29158988-29222883 [Contig_View]  ATAD5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176208 [Gene_View]  chr17:29158988-29222883 [Contig_View]  ATAD5 [Vega]
ICGC DataPortalENSG00000176208
TCGA cBioPortalATAD5
AceView (NCBI)ATAD5
Genatlas (Paris)ATAD5
WikiGenes79915
SOURCE (Princeton)ATAD5
Genetics Home Reference (NIH)ATAD5
Genomic and cartography
GoldenPath hg19 (UCSC)ATAD5  -     chr17:29158988-29222883 +  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATAD5  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblATAD5 - 17q11.2 [CytoView hg19]  ATAD5 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIATAD5 [Mapview hg19]  ATAD5 [Mapview hg38]
OMIM609534   
Gene and transcription
Genbank (Entrez)AJ314648 AK022797 AL832103 AY557611 BC015051
RefSeq transcript (Entrez)NM_024857
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)ATAD5
Cluster EST : UnigeneHs.528902 [ NCBI ]
CGAP (NCI)Hs.528902
Alternative Splicing GalleryENSG00000176208
Gene ExpressionATAD5 [ NCBI-GEO ]   ATAD5 [ EBI - ARRAY_EXPRESS ]   ATAD5 [ SEEK ]   ATAD5 [ MEM ]
Gene Expression Viewer (FireBrowse)ATAD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79915
GTEX Portal (Tissue expression)ATAD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QE3
Splice isoforms : SwissVarQ96QE3
PhosPhoSitePlusQ96QE3
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATAD5
DMDM Disease mutations79915
Blocks (Seattle)ATAD5
SuperfamilyQ96QE3
Human Protein AtlasENSG00000176208
Peptide AtlasQ96QE3
HPRD07792
IPIIPI00102575   IPI00885113   
Protein Interaction databases
DIP (DOE-UCLA)Q96QE3
IntAct (EBI)Q96QE3
FunCoupENSG00000176208
BioGRIDATAD5
STRING (EMBL)ATAD5
ZODIACATAD5
Ontologies - Pathways
QuickGOQ96QE3
Ontology : AmiGOATP binding  nucleus  cellular response to DNA damage stimulus  
Ontology : EGO-EBIATP binding  nucleus  cellular response to DNA damage stimulus  
NDEx NetworkATAD5
Atlas of Cancer Signalling NetworkATAD5
Wikipedia pathwaysATAD5
Orthology - Evolution
OrthoDB79915
GeneTree (enSembl)ENSG00000176208
Phylogenetic Trees/Animal Genes : TreeFamATAD5
HOVERGENQ96QE3
HOGENOMQ96QE3
Homologs : HomoloGeneATAD5
Homology/Alignments : Family Browser (UCSC)ATAD5
Gene fusions - Rearrangements
Fusion : MitelmanATAD5/EFCAB5 [17q11.2/17q11.2]  
Fusion : MitelmanATAD5/PTP4A1 [17q11.2/6q12]  [t(6;17)(q12;q11)]  
Fusion : MitelmanATAD5/SIPA1L3 [17q11.2/19q13.13]  [t(17;19)(q11;q13)]  
Fusion : MitelmanNF1/ATAD5 [17q11.2/17q11.2]  [t(17;17)(q11;q11)]  
Fusion: TCGAATAD5 17q11.2 EFCAB5 17q11.2 LUAD
Fusion: TCGAATAD5 17q11.2 PTP4A1 6q12 BLCA
Fusion: TCGAATAD5 17q11.2 SIPA1L3 19q13.13 BLCA
Fusion: TCGANF1 17q11.2 ATAD5 17q11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAD5
dbVarATAD5
ClinVarATAD5
1000_GenomesATAD5 
Exome Variant ServerATAD5
ExAC (Exome Aggregation Consortium)ATAD5 (select the gene name)
Genetic variants : HAPMAP79915
Genomic Variants (DGV)ATAD5 [DGVbeta]
DECIPHER (Syndromes)17:29158988-29222883  ENSG00000176208
CONAN: Copy Number AnalysisATAD5 
Mutations
ICGC Data PortalATAD5 
TCGA Data PortalATAD5 
Broad Tumor PortalATAD5
OASIS PortalATAD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATAD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATAD5
DgiDB (Drug Gene Interaction Database)ATAD5
DoCM (Curated mutations)ATAD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATAD5 (select a term)
intoGenATAD5
Cancer3DATAD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609534   
Orphanet
MedgenATAD5
Genetic Testing Registry ATAD5
NextProtQ96QE3 [Medical]
TSGene79915
GENETestsATAD5
Huge Navigator ATAD5 [HugePedia]
snp3D : Map Gene to Disease79915
BioCentury BCIQATAD5
ClinGenATAD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79915
Chemical/Pharm GKB GenePA162377100
Clinical trialATAD5
Miscellaneous
canSAR (ICR)ATAD5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATAD5
EVEXATAD5
GoPubMedATAD5
iHOPATAD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:48 CET 2017

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