Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATAT1 (alpha tubulin acetyltransferase 1)

Identity

Other aliasC6orf134
MEC17
Nbla00487
TAT
alpha-TAT
alpha-TAT1
HGNC (Hugo) ATAT1
LocusID (NCBI) 79969
Atlas_Id 57048
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30626886 and ends at 30646823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATAT1   21186
Cards
Entrez_Gene (NCBI)ATAT1  79969  alpha tubulin acetyltransferase 1
AliasesC6orf134; MEC17; Nbla00487; TAT; 
alpha-TAT; alpha-TAT1
GeneCards (Weizmann)ATAT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:30626886-30646823 [Contig_View]  ATAT1 [Vega]
TCGA cBioPortalATAT1
AceView (NCBI)ATAT1
Genatlas (Paris)ATAT1
WikiGenes79969
SOURCE (Princeton)ATAT1
Genetics Home Reference (NIH)ATAT1
Genomic and cartography
GoldenPath hg38 (UCSC)ATAT1  -     chr6:30626886-30646823 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATAT1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblATAT1 - 6p21.33 [CytoView hg19]  ATAT1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIATAT1 [Mapview hg19]  ATAT1 [Mapview hg38]
OMIM615556   
Gene and transcription
Genbank (Entrez)AB075512 AK023220 AK225107 AK297661 AK298743
RefSeq transcript (Entrez)NM_001031722 NM_001190724 NM_001254952 NM_001318762 NM_001318763 NM_024909
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)ATAT1
Cluster EST : UnigeneHs.654798 [ NCBI ]
CGAP (NCI)Hs.654798
Gene ExpressionATAT1 [ NCBI-GEO ]   ATAT1 [ EBI - ARRAY_EXPRESS ]   ATAT1 [ SEEK ]   ATAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79969
GTEX Portal (Tissue expression)ATAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQI0
Splice isoforms : SwissVarQ5SQI0
PhosPhoSitePlusQ5SQI0
Domaine pattern : Prosite (Expaxy)GNAT_ATAT (PS51730)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_ATAT   
Domain families : Pfam (Sanger)Acetyltransf_16 (PF05301)   
Domain families : Pfam (NCBI)pfam05301   
Conserved Domain (NCBI)ATAT1
DMDM Disease mutations79969
Blocks (Seattle)ATAT1
PDB (SRS)3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
PDB (PDBSum)3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
PDB (IMB)3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
PDB (RSDB)3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
Structural Biology KnowledgeBase3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
SCOP (Structural Classification of Proteins)3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
CATH (Classification of proteins structures)3VWD    3VWE    4B5O    4B5P    4GS4    4IF5    4PK2    4PK3    4U9Y    4U9Z   
SuperfamilyQ5SQI0
Peptide AtlasQ5SQI0
IPIIPI00329132   IPI00789297   IPI00794859   IPI00026795   IPI00844295   IPI00848136   IPI00903142   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQI0
IntAct (EBI)Q5SQI0
BioGRIDATAT1
STRING (EMBL)ATAT1
ZODIACATAT1
Ontologies - Pathways
QuickGOQ5SQI0
Ontology : AmiGOlysine N-acetyltransferase activity, acting on acetyl phosphate as donor  lysine N-acetyltransferase activity, acting on acetyl phosphate as donor  Golgi apparatus  cytosol  cytosol  microtubule  clathrin-coated pit  focal adhesion  spermatogenesis  tubulin N-acetyltransferase activity  tubulin N-acetyltransferase activity  dentate gyrus development  axon  regulation of fat cell differentiation  coenzyme binding  cilium assembly  regulation of microtubule cytoskeleton organization  alpha-tubulin acetylation  mitotic spindle  microtubule bundle  positive regulation of NLRP3 inflammasome complex assembly  
Ontology : EGO-EBIlysine N-acetyltransferase activity, acting on acetyl phosphate as donor  lysine N-acetyltransferase activity, acting on acetyl phosphate as donor  Golgi apparatus  cytosol  cytosol  microtubule  clathrin-coated pit  focal adhesion  spermatogenesis  tubulin N-acetyltransferase activity  tubulin N-acetyltransferase activity  dentate gyrus development  axon  regulation of fat cell differentiation  coenzyme binding  cilium assembly  regulation of microtubule cytoskeleton organization  alpha-tubulin acetylation  mitotic spindle  microtubule bundle  positive regulation of NLRP3 inflammasome complex assembly  
NDEx NetworkATAT1
Atlas of Cancer Signalling NetworkATAT1
Wikipedia pathwaysATAT1
Orthology - Evolution
OrthoDB79969
Phylogenetic Trees/Animal Genes : TreeFamATAT1
HOVERGENQ5SQI0
HOGENOMQ5SQI0
Homologs : HomoloGeneATAT1
Homology/Alignments : Family Browser (UCSC)ATAT1
Gene fusions - Rearrangements
Fusion: Tumor Portal ATAT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATAT1
dbVarATAT1
ClinVarATAT1
1000_GenomesATAT1 
Exome Variant ServerATAT1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79969
Genomic Variants (DGV)ATAT1 [DGVbeta]
DECIPHERATAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATAT1 
Mutations
ICGC Data PortalATAT1 
TCGA Data PortalATAT1 
Broad Tumor PortalATAT1
OASIS PortalATAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATAT1
DgiDB (Drug Gene Interaction Database)ATAT1
DoCM (Curated mutations)ATAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATAT1 (select a term)
intoGenATAT1
Cancer3DATAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615556   
Orphanet
MedgenATAT1
Genetic Testing Registry ATAT1
NextProtQ5SQI0 [Medical]
TSGene79969
GENETestsATAT1
Target ValidationATAT1
Huge Navigator ATAT1 [HugePedia]
snp3D : Map Gene to Disease79969
BioCentury BCIQATAT1
ClinGenATAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79969
Chemical/Pharm GKB GenePA134948212
Clinical trialATAT1
Miscellaneous
canSAR (ICR)ATAT1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATAT1
EVEXATAT1
GoPubMedATAT1
iHOPATAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:41:13 CET 2017

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