Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATCAY (ATCAY, caytaxin)

Identity

Alias_namesataxia, cerebellar, Cayman type
Alias_symbol (synonym)BNIP-H
Other aliasCLAC
HGNC (Hugo) ATCAY
LocusID (NCBI) 85300
Atlas_Id 60590
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3880620 and ends at 3928082 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATCAY (19p13.3) / ATCAY (19p13.3)LOC100507412 (-) / ATCAY (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATCAY   779
Cards
Entrez_Gene (NCBI)ATCAY  85300  ATCAY, caytaxin
AliasesBNIP-H; CLAC
GeneCards (Weizmann)ATCAY
Ensembl hg19 (Hinxton)ENSG00000167654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167654 [Gene_View]  ENSG00000167654 [Sequence]  chr19:3880620-3928082 [Contig_View]  ATCAY [Vega]
ICGC DataPortalENSG00000167654
TCGA cBioPortalATCAY
AceView (NCBI)ATCAY
Genatlas (Paris)ATCAY
WikiGenes85300
SOURCE (Princeton)ATCAY
Genetics Home Reference (NIH)ATCAY
Genomic and cartography
GoldenPath hg38 (UCSC)ATCAY  -     chr19:3880620-3928082 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATCAY  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblATCAY - 19p13.3 [CytoView hg19]  ATCAY - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIATCAY [Mapview hg19]  ATCAY [Mapview hg38]
OMIM601238   608179   
Gene and transcription
Genbank (Entrez)AB058775 AK027889 AK092309 AK125457 AK299522
RefSeq transcript (Entrez)NM_033064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATCAY
Cluster EST : UnigeneHs.418055 [ NCBI ]
CGAP (NCI)Hs.418055
Alternative Splicing GalleryENSG00000167654
Gene ExpressionATCAY [ NCBI-GEO ]   ATCAY [ EBI - ARRAY_EXPRESS ]   ATCAY [ SEEK ]   ATCAY [ MEM ]
Gene Expression Viewer (FireBrowse)ATCAY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85300
GTEX Portal (Tissue expression)ATCAY
Human Protein AtlasENSG00000167654-ATCAY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WG3
Splice isoforms : SwissVarQ86WG3
PhosPhoSitePlusQ86WG3
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)   
Domains : Interpro (EBI)Bcl2-/adenovirus-E1B    CRAL-TRIO_dom   
Domain families : Pfam (Sanger)BNIP2 (PF12496)    CRAL_TRIO_2 (PF13716)   
Domain families : Pfam (NCBI)pfam12496    pfam13716   
Domain families : Smart (EMBL)SEC14 (SM00516)  
Conserved Domain (NCBI)ATCAY
DMDM Disease mutations85300
Blocks (Seattle)ATCAY
SuperfamilyQ86WG3
Human Protein Atlas [tissue]ENSG00000167654-ATCAY [tissue]
Peptide AtlasQ86WG3
HPRD10491
IPIIPI00179463   IPI00873010   IPI00382576   IPI00937963   IPI00478063   IPI01019064   
Protein Interaction databases
DIP (DOE-UCLA)Q86WG3
IntAct (EBI)Q86WG3
FunCoupENSG00000167654
BioGRIDATCAY
STRING (EMBL)ATCAY
ZODIACATCAY
Ontologies - Pathways
QuickGOQ86WG3
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                  
NDEx NetworkATCAY
Atlas of Cancer Signalling NetworkATCAY
Wikipedia pathwaysATCAY
Orthology - Evolution
OrthoDB85300
GeneTree (enSembl)ENSG00000167654
Phylogenetic Trees/Animal Genes : TreeFamATCAY
HOVERGENQ86WG3
HOGENOMQ86WG3
Homologs : HomoloGeneATCAY
Homology/Alignments : Family Browser (UCSC)ATCAY
Gene fusions - Rearrangements
Fusion : QuiverATCAY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATCAY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATCAY
dbVarATCAY
ClinVarATCAY
1000_GenomesATCAY 
Exome Variant ServerATCAY
ExAC (Exome Aggregation Consortium)ENSG00000167654
GNOMAD BrowserENSG00000167654
Varsome BrowserATCAY
Genetic variants : HAPMAP85300
Genomic Variants (DGV)ATCAY [DGVbeta]
DECIPHERATCAY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATCAY 
Mutations
ICGC Data PortalATCAY 
TCGA Data PortalATCAY 
Broad Tumor PortalATCAY
OASIS PortalATCAY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATCAY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATCAY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATCAY
DgiDB (Drug Gene Interaction Database)ATCAY
DoCM (Curated mutations)ATCAY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATCAY (select a term)
intoGenATCAY
Cancer3DATCAY(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601238    608179   
Orphanet12563   
DisGeNETATCAY
MedgenATCAY
Genetic Testing Registry ATCAY
NextProtQ86WG3 [Medical]
TSGene85300
GENETestsATCAY
Target ValidationATCAY
Huge Navigator ATCAY [HugePedia]
snp3D : Map Gene to Disease85300
BioCentury BCIQATCAY
ClinGenATCAY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85300
Chemical/Pharm GKB GenePA25080
Clinical trialATCAY
Miscellaneous
canSAR (ICR)ATCAY (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATCAY
EVEXATCAY
GoPubMedATCAY
iHOPATCAY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:36:16 CEST 2018
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