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ATF6B (activating transcription factor 6 beta)

Identity

Alias_namesCREBL1
cAMP responsive element binding protein-like 1
Alias_symbol (synonym)G13
Other aliasCREB-RP
HGNC (Hugo) ATF6B
LocusID (NCBI) 1388
Atlas_Id 60593
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32115268 and ends at 32128240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATF6B (6p21.33) / CMAHP (6p22.3)ATF6B (6p21.33) / GNG4 (1q42.3)ATF6B (6p21.33) / KRTCAP2 (1q22)
ATF6B (6p21.33) / RBM39 (20q11.22)TNXB (6p21.33) / ATF6B (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p21;p22) ATF6B/CMAHP


External links

Nomenclature
HGNC (Hugo)ATF6B   2349
Cards
Entrez_Gene (NCBI)ATF6B  1388  activating transcription factor 6 beta
AliasesCREB-RP; CREBL1; G13
GeneCards (Weizmann)ATF6B
Ensembl hg19 (Hinxton)ENSG00000213676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213676 [Gene_View]  chr6:32115268-32128240 [Contig_View]  ATF6B [Vega]
ICGC DataPortalENSG00000213676
TCGA cBioPortalATF6B
AceView (NCBI)ATF6B
Genatlas (Paris)ATF6B
WikiGenes1388
SOURCE (Princeton)ATF6B
Genetics Home Reference (NIH)ATF6B
Genomic and cartography
GoldenPath hg38 (UCSC)ATF6B  -     chr6:32115268-32128240 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATF6B  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblATF6B - 6p21.32 [CytoView hg19]  ATF6B - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIATF6B [Mapview hg19]  ATF6B [Mapview hg38]
OMIM600984   
Gene and transcription
Genbank (Entrez)AK000928 BC008394 BC077075 BT007042 U31903
RefSeq transcript (Entrez)NM_001136153 NM_004381
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_033940 NT_113891 NT_167245 NT_167247
Consensus coding sequences : CCDS (NCBI)ATF6B
Cluster EST : UnigeneHs.42853 [ NCBI ]
CGAP (NCI)Hs.42853
Alternative Splicing GalleryENSG00000213676
Gene ExpressionATF6B [ NCBI-GEO ]   ATF6B [ EBI - ARRAY_EXPRESS ]   ATF6B [ SEEK ]   ATF6B [ MEM ]
Gene Expression Viewer (FireBrowse)ATF6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1388
GTEX Portal (Tissue expression)ATF6B
Human Protein AtlasENSG00000213676-ATF6B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99941   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99941  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99941
Splice isoforms : SwissVarQ99941
PhosPhoSitePlusQ99941
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)    BZIP_BASIC (PS00036)   
Domains : Interpro (EBI)ATF6B    bZIP   
Domain families : Pfam (Sanger)bZIP_1 (PF00170)   
Domain families : Pfam (NCBI)pfam00170   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)ATF6B
DMDM Disease mutations1388
Blocks (Seattle)ATF6B
SuperfamilyQ99941
Human Protein Atlas [tissue]ENSG00000213676-ATF6B [tissue]
Peptide AtlasQ99941
HPRD02992
IPIIPI00004084   IPI00221087   IPI00514304   IPI00791919   IPI00847851   
Protein Interaction databases
DIP (DOE-UCLA)Q99941
IntAct (EBI)Q99941
FunCoupENSG00000213676
BioGRIDATF6B
STRING (EMBL)ATF6B
ZODIACATF6B
Ontologies - Pathways
QuickGOQ99941
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                  
NDEx NetworkATF6B
Atlas of Cancer Signalling NetworkATF6B
Wikipedia pathwaysATF6B
Orthology - Evolution
OrthoDB1388
GeneTree (enSembl)ENSG00000213676
Phylogenetic Trees/Animal Genes : TreeFamATF6B
HOVERGENQ99941
HOGENOMQ99941
Homologs : HomoloGeneATF6B
Homology/Alignments : Family Browser (UCSC)ATF6B
Gene fusions - Rearrangements
Fusion : QuiverATF6B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATF6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATF6B
dbVarATF6B
ClinVarATF6B
1000_GenomesATF6B 
Exome Variant ServerATF6B
ExAC (Exome Aggregation Consortium)ENSG00000213676
GNOMAD BrowserENSG00000213676
Genetic variants : HAPMAP1388
Genomic Variants (DGV)ATF6B [DGVbeta]
DECIPHERATF6B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATF6B 
Mutations
ICGC Data PortalATF6B 
TCGA Data PortalATF6B 
Broad Tumor PortalATF6B
OASIS PortalATF6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATF6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATF6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATF6B
DgiDB (Drug Gene Interaction Database)ATF6B
DoCM (Curated mutations)ATF6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATF6B (select a term)
intoGenATF6B
Cancer3DATF6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600984   
Orphanet
DisGeNETATF6B
MedgenATF6B
Genetic Testing Registry ATF6B
NextProtQ99941 [Medical]
TSGene1388
GENETestsATF6B
Target ValidationATF6B
Huge Navigator ATF6B [HugePedia]
snp3D : Map Gene to Disease1388
BioCentury BCIQATF6B
ClinGenATF6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1388
Chemical/Pharm GKB GenePA164716250
Clinical trialATF6B
Miscellaneous
canSAR (ICR)ATF6B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATF6B
EVEXATF6B
GoPubMedATF6B
iHOPATF6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:11:30 CET 2018

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