Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATF7IP2 (activating transcription factor 7 interacting protein 2)

Identity

Alias_symbol (synonym)FLJ12668
Other aliasMCAF2
HGNC (Hugo) ATF7IP2
LocusID (NCBI) 80063
Atlas_Id 60594
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 10386055 and ends at 10483638 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATF7IP2   20397
Cards
Entrez_Gene (NCBI)ATF7IP2  80063  activating transcription factor 7 interacting protein 2
AliasesMCAF2
GeneCards (Weizmann)ATF7IP2
Ensembl hg19 (Hinxton)ENSG00000166669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166669 [Gene_View]  chr16:10386055-10483638 [Contig_View]  ATF7IP2 [Vega]
ICGC DataPortalENSG00000166669
TCGA cBioPortalATF7IP2
AceView (NCBI)ATF7IP2
Genatlas (Paris)ATF7IP2
WikiGenes80063
SOURCE (Princeton)ATF7IP2
Genetics Home Reference (NIH)ATF7IP2
Genomic and cartography
GoldenPath hg38 (UCSC)ATF7IP2  -     chr16:10386055-10483638 +  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATF7IP2  -     16p13.2   [Description]    (hg19-Feb_2009)
EnsemblATF7IP2 - 16p13.2 [CytoView hg19]  ATF7IP2 - 16p13.2 [CytoView hg38]
Mapping of homologs : NCBIATF7IP2 [Mapview hg19]  ATF7IP2 [Mapview hg38]
OMIM613645   
Gene and transcription
Genbank (Entrez)AK022730 AK093414 AK223492 AK296565 AK299040
RefSeq transcript (Entrez)NM_001256160 NM_024997
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATF7IP2
Cluster EST : UnigeneHs.742019 [ NCBI ]
CGAP (NCI)Hs.742019
Alternative Splicing GalleryENSG00000166669
Gene ExpressionATF7IP2 [ NCBI-GEO ]   ATF7IP2 [ EBI - ARRAY_EXPRESS ]   ATF7IP2 [ SEEK ]   ATF7IP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATF7IP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80063
GTEX Portal (Tissue expression)ATF7IP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U623   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U623  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U623
Splice isoforms : SwissVarQ5U623
PhosPhoSitePlusQ5U623
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)ATF7-int    ATF7-int_2    ATF7IP_BD    FN3_dom   
Domain families : Pfam (Sanger)ATF7IP_BD (PF16788)    fn3_4 (PF16794)   
Domain families : Pfam (NCBI)pfam16788    pfam16794   
Conserved Domain (NCBI)ATF7IP2
DMDM Disease mutations80063
Blocks (Seattle)ATF7IP2
SuperfamilyQ5U623
Human Protein AtlasENSG00000166669
Peptide AtlasQ5U623
HPRD16517
IPIIPI00411827   IPI00167841   IPI01015245   IPI00909076   
Protein Interaction databases
DIP (DOE-UCLA)Q5U623
IntAct (EBI)Q5U623
FunCoupENSG00000166669
BioGRIDATF7IP2
STRING (EMBL)ATF7IP2
ZODIACATF7IP2
Ontologies - Pathways
QuickGOQ5U623
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkATF7IP2
Atlas of Cancer Signalling NetworkATF7IP2
Wikipedia pathwaysATF7IP2
Orthology - Evolution
OrthoDB80063
GeneTree (enSembl)ENSG00000166669
Phylogenetic Trees/Animal Genes : TreeFamATF7IP2
HOVERGENQ5U623
HOGENOMQ5U623
Homologs : HomoloGeneATF7IP2
Homology/Alignments : Family Browser (UCSC)ATF7IP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATF7IP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATF7IP2
dbVarATF7IP2
ClinVarATF7IP2
1000_GenomesATF7IP2 
Exome Variant ServerATF7IP2
ExAC (Exome Aggregation Consortium)ATF7IP2 (select the gene name)
Genetic variants : HAPMAP80063
Genomic Variants (DGV)ATF7IP2 [DGVbeta]
DECIPHERATF7IP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATF7IP2 
Mutations
ICGC Data PortalATF7IP2 
TCGA Data PortalATF7IP2 
Broad Tumor PortalATF7IP2
OASIS PortalATF7IP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATF7IP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATF7IP2
DgiDB (Drug Gene Interaction Database)ATF7IP2
DoCM (Curated mutations)ATF7IP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATF7IP2 (select a term)
intoGenATF7IP2
Cancer3DATF7IP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613645   
Orphanet
MedgenATF7IP2
Genetic Testing Registry ATF7IP2
NextProtQ5U623 [Medical]
TSGene80063
GENETestsATF7IP2
Target ValidationATF7IP2
Huge Navigator ATF7IP2 [HugePedia]
snp3D : Map Gene to Disease80063
BioCentury BCIQATF7IP2
ClinGenATF7IP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80063
Chemical/Pharm GKB GenePA134988230
Clinical trialATF7IP2
Miscellaneous
canSAR (ICR)ATF7IP2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATF7IP2
EVEXATF7IP2
GoPubMedATF7IP2
iHOPATF7IP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.