Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATG101 (autophagy related 101)

Identity

Alias_namesC12orf44
chromosome 12 open reading frame 44
Alias_symbol (synonym)FLJ11773
Other alias
HGNC (Hugo) ATG101
LocusID (NCBI) 60673
Atlas_Id 53809
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52069974 and ends at 52077495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATG101   25679
Cards
Entrez_Gene (NCBI)ATG101  60673  autophagy related 101
AliasesC12orf44
GeneCards (Weizmann)ATG101
Ensembl hg19 (Hinxton)ENSG00000123395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123395 [Gene_View]  chr12:52069974-52077495 [Contig_View]  ATG101 [Vega]
ICGC DataPortalENSG00000123395
TCGA cBioPortalATG101
AceView (NCBI)ATG101
Genatlas (Paris)ATG101
WikiGenes60673
SOURCE (Princeton)ATG101
Genetics Home Reference (NIH)ATG101
Genomic and cartography
GoldenPath hg38 (UCSC)ATG101  -     chr12:52069974-52077495 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG101  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblATG101 - 12q13.13 [CytoView hg19]  ATG101 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIATG101 [Mapview hg19]  ATG101 [Mapview hg38]
OMIM615089   
Gene and transcription
Genbank (Entrez)AF218031 AK021835 BC005151 BC009937 BC064533
RefSeq transcript (Entrez)NM_001098673 NM_021934
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATG101
Cluster EST : UnigeneHs.9911 [ NCBI ]
CGAP (NCI)Hs.9911
Alternative Splicing GalleryENSG00000123395
Gene ExpressionATG101 [ NCBI-GEO ]   ATG101 [ EBI - ARRAY_EXPRESS ]   ATG101 [ SEEK ]   ATG101 [ MEM ]
Gene Expression Viewer (FireBrowse)ATG101 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60673
GTEX Portal (Tissue expression)ATG101
Human Protein AtlasENSG00000123395-ATG101 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSB4
Splice isoforms : SwissVarQ9BSB4
PhosPhoSitePlusQ9BSB4
Domains : Interpro (EBI)ATG101   
Domain families : Pfam (Sanger)ATG101 (PF07855)   
Domain families : Pfam (NCBI)pfam07855   
Conserved Domain (NCBI)ATG101
DMDM Disease mutations60673
Blocks (Seattle)ATG101
PDB (SRS)4WZG    5C50   
PDB (PDBSum)4WZG    5C50   
PDB (IMB)4WZG    5C50   
PDB (RSDB)4WZG    5C50   
Structural Biology KnowledgeBase4WZG    5C50   
SCOP (Structural Classification of Proteins)4WZG    5C50   
CATH (Classification of proteins structures)4WZG    5C50   
SuperfamilyQ9BSB4
Human Protein Atlas [tissue]ENSG00000123395-ATG101 [tissue]
Peptide AtlasQ9BSB4
HPRD08566
IPIIPI00305296   IPI01022894   IPI01021405   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSB4
IntAct (EBI)Q9BSB4
FunCoupENSG00000123395
BioGRIDATG101
STRING (EMBL)ATG101
ZODIACATG101
Ontologies - Pathways
QuickGOQ9BSB4
Ontology : AmiGOautophagosome assembly  phagophore assembly site  protein binding  endoplasmic reticulum membrane  cytosol  macroautophagy  regulation of macroautophagy  protein complex binding  identical protein binding  
Ontology : EGO-EBIautophagosome assembly  phagophore assembly site  protein binding  endoplasmic reticulum membrane  cytosol  macroautophagy  regulation of macroautophagy  protein complex binding  identical protein binding  
NDEx NetworkATG101
Atlas of Cancer Signalling NetworkATG101
Wikipedia pathwaysATG101
Orthology - Evolution
OrthoDB60673
GeneTree (enSembl)ENSG00000123395
Phylogenetic Trees/Animal Genes : TreeFamATG101
HOVERGENQ9BSB4
HOGENOMQ9BSB4
Homologs : HomoloGeneATG101
Homology/Alignments : Family Browser (UCSC)ATG101
Gene fusions - Rearrangements
Fusion : QuiverATG101
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG101 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG101
dbVarATG101
ClinVarATG101
1000_GenomesATG101 
Exome Variant ServerATG101
ExAC (Exome Aggregation Consortium)ENSG00000123395
GNOMAD BrowserENSG00000123395
Genetic variants : HAPMAP60673
Genomic Variants (DGV)ATG101 [DGVbeta]
DECIPHERATG101 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG101 
Mutations
ICGC Data PortalATG101 
TCGA Data PortalATG101 
Broad Tumor PortalATG101
OASIS PortalATG101 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATG101
BioMutasearch ATG101
DgiDB (Drug Gene Interaction Database)ATG101
DoCM (Curated mutations)ATG101 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG101 (select a term)
intoGenATG101
Cancer3DATG101(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615089   
Orphanet
DisGeNETATG101
MedgenATG101
Genetic Testing Registry ATG101
NextProtQ9BSB4 [Medical]
TSGene60673
GENETestsATG101
Target ValidationATG101
Huge Navigator ATG101 [HugePedia]
snp3D : Map Gene to Disease60673
BioCentury BCIQATG101
ClinGenATG101
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60673
Chemical/Pharm GKB GenePA143485374
Clinical trialATG101
Miscellaneous
canSAR (ICR)ATG101 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG101
EVEXATG101
GoPubMedATG101
iHOPATG101
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:02:11 CET 2018
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