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ATG13 (autophagy related 13)

Identity

Alias_namesKIAA0652
KIAA0652
ATG13 autophagy related 13 homolog (S. cerevisiae)
Other aliasPARATARG8
HGNC (Hugo) ATG13
LocusID (NCBI) 9776
Atlas_Id 60595
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46638826 and ends at 46697568 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATG13 (11p11.2) / AMBRA1 (11p11.2)ATG13 (11p11.2) / ELP4 (11p13)ATG13 (11p11.2) / FMNL2 (2q23.3)
ATG13 (11p11.2) / FTL (19q13.33)ATG13 (11p11.2) / MYO15B (17q25.1)ATG13 (11p11.2) / TSPAN18 (11p11.2)
ATG13 TSPAN18ATG13 ELP4ATG13 AMBRA1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATG13   29091
Cards
Entrez_Gene (NCBI)ATG13  9776  autophagy related 13
AliasesKIAA0652; PARATARG8
GeneCards (Weizmann)ATG13
Ensembl hg19 (Hinxton)ENSG00000175224 [Gene_View]  chr11:46638826-46697568 [Contig_View]  ATG13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175224 [Gene_View]  chr11:46638826-46697568 [Contig_View]  ATG13 [Vega]
ICGC DataPortalENSG00000175224
TCGA cBioPortalATG13
AceView (NCBI)ATG13
Genatlas (Paris)ATG13
WikiGenes9776
SOURCE (Princeton)ATG13
Genetics Home Reference (NIH)ATG13
Genomic and cartography
GoldenPath hg19 (UCSC)ATG13  -     chr11:46638826-46697568 +  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATG13  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblATG13 - 11p11.2 [CytoView hg19]  ATG13 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIATG13 [Mapview hg19]  ATG13 [Mapview hg38]
OMIM615088   
Gene and transcription
Genbank (Entrez)AB014552 AF052175 AK000705 AK023867 AK223603
RefSeq transcript (Entrez)NM_001142673 NM_001205119 NM_001205120 NM_001205121 NM_001205122 NM_014741
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)ATG13
Cluster EST : UnigeneHs.127403 [ NCBI ]
CGAP (NCI)Hs.127403
Alternative Splicing GalleryENSG00000175224
Gene ExpressionATG13 [ NCBI-GEO ]   ATG13 [ EBI - ARRAY_EXPRESS ]   ATG13 [ SEEK ]   ATG13 [ MEM ]
Gene Expression Viewer (FireBrowse)ATG13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9776
GTEX Portal (Tissue expression)ATG13
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75143   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75143  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75143
Splice isoforms : SwissVarO75143
PhosPhoSitePlusO75143
Domains : Interpro (EBI)Autophagy-rel_p13   
Domain families : Pfam (Sanger)ATG13 (PF10033)   
Domain families : Pfam (NCBI)pfam10033   
Conserved Domain (NCBI)ATG13
DMDM Disease mutations9776
Blocks (Seattle)ATG13
PDB (SRS)3WAN    3WAO    3WAP   
PDB (PDBSum)3WAN    3WAO    3WAP   
PDB (IMB)3WAN    3WAO    3WAP   
PDB (RSDB)3WAN    3WAO    3WAP   
Structural Biology KnowledgeBase3WAN    3WAO    3WAP   
SCOP (Structural Classification of Proteins)3WAN    3WAO    3WAP   
CATH (Classification of proteins structures)3WAN    3WAO    3WAP   
SuperfamilyO75143
Human Protein AtlasENSG00000175224
Peptide AtlasO75143
HPRD13809
IPIIPI00006080   IPI00219053   IPI00219054   IPI00981591   IPI00978885   IPI00984010   IPI00979490   IPI00982237   IPI00975491   IPI00983483   
Protein Interaction databases
DIP (DOE-UCLA)O75143
IntAct (EBI)O75143
FunCoupENSG00000175224
BioGRIDATG13
STRING (EMBL)ATG13
ZODIACATG13
Ontologies - Pathways
QuickGOO75143
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  pre-autophagosomal structure  protein binding  mitochondrion  cytosol  protein kinase binding  ATG1/UKL1 signaling complex  ULK1-ATG13-FIP200 complex  activation of mitophagy in response to mitochondrial depolarization  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  pre-autophagosomal structure  protein binding  mitochondrion  cytosol  protein kinase binding  ATG1/UKL1 signaling complex  ULK1-ATG13-FIP200 complex  activation of mitophagy in response to mitochondrial depolarization  positive regulation of protein targeting to mitochondrion  
Pathways : KEGGRegulation of autophagy   
NDEx NetworkATG13
Atlas of Cancer Signalling NetworkATG13
Wikipedia pathwaysATG13
Orthology - Evolution
OrthoDB9776
GeneTree (enSembl)ENSG00000175224
Phylogenetic Trees/Animal Genes : TreeFamATG13
HOVERGENO75143
HOGENOMO75143
Homologs : HomoloGeneATG13
Homology/Alignments : Family Browser (UCSC)ATG13
Gene fusions - Rearrangements
Fusion: TCGAATG13 TSPAN18
Fusion: TCGAATG13 ELP4
Fusion: TCGAATG13 AMBRA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG13
dbVarATG13
ClinVarATG13
1000_GenomesATG13 
Exome Variant ServerATG13
ExAC (Exome Aggregation Consortium)ATG13 (select the gene name)
Genetic variants : HAPMAP9776
Genomic Variants (DGV)ATG13 [DGVbeta]
DECIPHER (Syndromes)11:46638826-46697568  ENSG00000175224
CONAN: Copy Number AnalysisATG13 
Mutations
ICGC Data PortalATG13 
TCGA Data PortalATG13 
Broad Tumor PortalATG13
OASIS PortalATG13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATG13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATG13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATG13
DgiDB (Drug Gene Interaction Database)ATG13
DoCM (Curated mutations)ATG13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG13 (select a term)
intoGenATG13
Cancer3DATG13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615088   
Orphanet
MedgenATG13
Genetic Testing Registry ATG13
NextProtO75143 [Medical]
TSGene9776
GENETestsATG13
Huge Navigator ATG13 [HugePedia]
snp3D : Map Gene to Disease9776
BioCentury BCIQATG13
ClinGenATG13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9776
Chemical/Pharm GKB GenePA165543187
Clinical trialATG13
Miscellaneous
canSAR (ICR)ATG13 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG13
EVEXATG13
GoPubMedATG13
iHOPATG13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:18 CET 2017

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