Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATG13 (autophagy related 13)

Identity

Other aliasKIAA0652
PARATARG8
HGNC (Hugo) ATG13
LocusID (NCBI) 9776
Atlas_Id 56942
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46617276 and ends at 46676018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG13 (11p11.2) / AMBRA1 (11p11.2)ATG13 (11p11.2) / ELP4 (11p13)ATG13 (11p11.2) / FMNL2 (2q23.3)
ATG13 (11p11.2) / FTL (19q13.33)ATG13 (11p11.2) / MYO15B (17q25.1)ATG13 (11p11.2) / TSPAN18 (11p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATG13   29091
Cards
Entrez_Gene (NCBI)ATG13  9776  autophagy related 13
AliasesKIAA0652; PARATARG8
GeneCards (Weizmann)ATG13
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:46617276-46676018 [Contig_View]  ATG13 [Vega]
TCGA cBioPortalATG13
AceView (NCBI)ATG13
Genatlas (Paris)ATG13
WikiGenes9776
SOURCE (Princeton)ATG13
Genetics Home Reference (NIH)ATG13
Genomic and cartography
GoldenPath hg38 (UCSC)ATG13  -     chr11:46617276-46676018 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG13  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblATG13 - 11p11.2 [CytoView hg19]  ATG13 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIATG13 [Mapview hg19]  ATG13 [Mapview hg38]
OMIM615088   
Gene and transcription
Genbank (Entrez)AB014552 AF052175 AK000705 AK023867 AK223603
RefSeq transcript (Entrez)NM_001142673 NM_001205119 NM_001205120 NM_001205121 NM_001205122 NM_001346311 NM_001346312 NM_001346313 NM_001346314 NM_001346315 NM_001346316 NM_001346317 NM_001346318 NM_001346319 NM_001346320 NM_001346321 NM_001346322 NM_001346323 NM_001346324 NM_001346325 NM_001346326 NM_001346327 NM_001346328 NM_001346329 NM_001346330 NM_001346331 NM_001346332 NM_001346333 NM_001346334 NM_001346335 NM_001346336 NM_001346337 NM_001346338 NM_001346340 NM_001346342 NM_001346344 NM_001346346 NM_001346348 NM_001346349 NM_001346350 NM_001346351 NM_001346352 NM_001346353 NM_001346354 NM_001346355 NM_001346356 NM_001346357 NM_001346358 NM_001346359 NM_001346360 NM_014741
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATG13
Cluster EST : UnigeneHs.127403 [ NCBI ]
CGAP (NCI)Hs.127403
Gene ExpressionATG13 [ NCBI-GEO ]   ATG13 [ EBI - ARRAY_EXPRESS ]   ATG13 [ SEEK ]   ATG13 [ MEM ]
Gene Expression Viewer (FireBrowse)ATG13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9776
GTEX Portal (Tissue expression)ATG13
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75143   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75143  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75143
Splice isoforms : SwissVarO75143
PhosPhoSitePlusO75143
Domains : Interpro (EBI)Atg13   
Domain families : Pfam (Sanger)ATG13 (PF10033)   
Domain families : Pfam (NCBI)pfam10033   
Conserved Domain (NCBI)ATG13
DMDM Disease mutations9776
Blocks (Seattle)ATG13
PDB (SRS)3WAN    3WAO    3WAP    5C50   
PDB (PDBSum)3WAN    3WAO    3WAP    5C50   
PDB (IMB)3WAN    3WAO    3WAP    5C50   
PDB (RSDB)3WAN    3WAO    3WAP    5C50   
Structural Biology KnowledgeBase3WAN    3WAO    3WAP    5C50   
SCOP (Structural Classification of Proteins)3WAN    3WAO    3WAP    5C50   
CATH (Classification of proteins structures)3WAN    3WAO    3WAP    5C50   
SuperfamilyO75143
Peptide AtlasO75143
IPIIPI00006080   IPI00219053   IPI00219054   IPI00981591   IPI00978885   IPI00984010   IPI00979490   IPI00982237   IPI00975491   IPI00983483   
Protein Interaction databases
DIP (DOE-UCLA)O75143
IntAct (EBI)O75143
BioGRIDATG13
STRING (EMBL)ATG13
ZODIACATG13
Ontologies - Pathways
QuickGOO75143
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  pre-autophagosomal structure  mitophagy  protein binding  mitochondrion  endoplasmic reticulum membrane  cytosol  cytosol  macroautophagy  regulation of macroautophagy  protein kinase binding  response to mitochondrial depolarisation  positive regulation of protein targeting to mitochondrion  ATG1/ULK1 kinase complex  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  pre-autophagosomal structure  mitophagy  protein binding  mitochondrion  endoplasmic reticulum membrane  cytosol  cytosol  macroautophagy  regulation of macroautophagy  protein kinase binding  response to mitochondrial depolarisation  positive regulation of protein targeting to mitochondrion  ATG1/ULK1 kinase complex  
Pathways : KEGGRegulation of autophagy   
NDEx NetworkATG13
Atlas of Cancer Signalling NetworkATG13
Wikipedia pathwaysATG13
Orthology - Evolution
OrthoDB9776
Phylogenetic Trees/Animal Genes : TreeFamATG13
HOVERGENO75143
HOGENOMO75143
Homologs : HomoloGeneATG13
Homology/Alignments : Family Browser (UCSC)ATG13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG13
dbVarATG13
ClinVarATG13
1000_GenomesATG13 
Exome Variant ServerATG13
ExAC (Exome Aggregation Consortium)ATG13 (select the gene name)
Genetic variants : HAPMAP9776
Genomic Variants (DGV)ATG13 [DGVbeta]
DECIPHERATG13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG13 
Mutations
ICGC Data PortalATG13 
TCGA Data PortalATG13 
Broad Tumor PortalATG13
OASIS PortalATG13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATG13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATG13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATG13
DgiDB (Drug Gene Interaction Database)ATG13
DoCM (Curated mutations)ATG13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG13 (select a term)
intoGenATG13
Cancer3DATG13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615088   
Orphanet
MedgenATG13
Genetic Testing Registry ATG13
NextProtO75143 [Medical]
TSGene9776
GENETestsATG13
Target ValidationATG13
Huge Navigator ATG13 [HugePedia]
snp3D : Map Gene to Disease9776
BioCentury BCIQATG13
ClinGenATG13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9776
Chemical/Pharm GKB GenePA165543187
Clinical trialATG13
Miscellaneous
canSAR (ICR)ATG13 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG13
EVEXATG13
GoPubMedATG13
iHOPATG13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:47:27 CEST 2017

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