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ATG13 (autophagy related 13)

Identity

Alias (NCBI)KIAA0652
PARATARG8
HGNC (Hugo) ATG13
HGNC Previous nameKIAA0652
HGNC Previous nameKIAA0652
 ATG13 autophagy related 13 homolog (S. cerevisiae)
LocusID (NCBI) 9776
Atlas_Id 56942
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46617276 and ends at 46676018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATG13 (11p11.2) / AMBRA1 (11p11.2)ATG13 (11p11.2) / ELP4 (11p13)ATG13 (11p11.2) / FMNL2 (2q23.3)
ATG13 (11p11.2) / FTL (19q13.33)ATG13 (11p11.2) / MYO15B (17q25.1)ATG13 (11p11.2) / TSPAN18 (11p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ATG13   29091
Cards
Entrez_Gene (NCBI)ATG13    autophagy related 13
AliasesKIAA0652; PARATARG8
GeneCards (Weizmann)ATG13
Ensembl hg19 (Hinxton)ENSG00000175224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175224 [Gene_View]  ENSG00000175224 [Sequence]  chr11:46617276-46676018 [Contig_View]  ATG13 [Vega]
ICGC DataPortalENSG00000175224
TCGA cBioPortalATG13
AceView (NCBI)ATG13
Genatlas (Paris)ATG13
SOURCE (Princeton)ATG13
Genetics Home Reference (NIH)ATG13
Genomic and cartography
GoldenPath hg38 (UCSC)ATG13  -     chr11:46617276-46676018 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG13  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathATG13 - 11p11.2 [CytoView hg19]  ATG13 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000175224
Genome Data Viewer NCBIATG13 [Mapview hg19]  
OMIM615088   
Gene and transcription
Genbank (Entrez)AB014552 AF052175 AK000705 AK023867 AK223603
RefSeq transcript (Entrez)NM_001142673 NM_001205119 NM_001205120 NM_001205121 NM_001205122 NM_001346311 NM_001346312 NM_001346313 NM_001346314 NM_001346315 NM_001346316 NM_001346317 NM_001346318 NM_001346319 NM_001346320 NM_001346321 NM_001346322 NM_001346323 NM_001346324 NM_001346325 NM_001346326 NM_001346327 NM_001346328 NM_001346329 NM_001346330 NM_001346331 NM_001346332 NM_001346333 NM_001346334 NM_001346335 NM_001346336 NM_001346337 NM_001346338 NM_001346340 NM_001346342 NM_001346344 NM_001346346 NM_001346348 NM_001346349 NM_001346350 NM_001346351 NM_001346352 NM_001346353 NM_001346354 NM_001346355 NM_001346356 NM_001346357 NM_001346358 NM_001346359 NM_001346360 NM_014741
Consensus coding sequences : CCDS (NCBI)ATG13
Gene ExpressionATG13 [ NCBI-GEO ]   ATG13 [ EBI - ARRAY_EXPRESS ]   ATG13 [ SEEK ]   ATG13 [ MEM ]
Gene Expression Viewer (FireBrowse)ATG13 [ Firebrowse - Broad ]
GenevisibleExpression of ATG13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9776
GTEX Portal (Tissue expression)ATG13
Human Protein AtlasENSG00000175224-ATG13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75143   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75143  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75143
PhosPhoSitePlusO75143
Domains : Interpro (EBI)ATG13    Atg13_N    HORMA_dom_sf   
Domain families : Pfam (Sanger)ATG13 (PF10033)   
Domain families : Pfam (NCBI)pfam10033   
Conserved Domain (NCBI)ATG13
PDB (RSDB)3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
PDB Europe3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
PDB (PDBSum)3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
PDB (IMB)3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
Structural Biology KnowledgeBase3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
SCOP (Structural Classification of Proteins)3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
CATH (Classification of proteins structures)3WAN    3WAO    3WAP    5C50    5XUY    5XV1    5XV3    5XV4    5XV6    6HYN   
SuperfamilyO75143
AlphaFold pdb e-kbO75143   
Human Protein Atlas [tissue]ENSG00000175224-ATG13 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O75143
IntAct (EBI)O75143
BioGRIDATG13
STRING (EMBL)ATG13
ZODIACATG13
Ontologies - Pathways
QuickGOO75143
Ontology : AmiGOautophagosome assembly  autophagosome assembly  phagophore assembly site  phagophore assembly site  mitophagy  protein binding  mitochondrion  endoplasmic reticulum membrane  cytosol  cytosol  macroautophagy  regulation of macroautophagy  extrinsic component of membrane  protein kinase binding  protein localization to phagophore assembly site  piecemeal microautophagy of the nucleus  positive regulation of protein targeting to mitochondrion  Atg1/ULK1 kinase complex  Atg1/ULK1 kinase complex  
Ontology : EGO-EBIautophagosome assembly  autophagosome assembly  phagophore assembly site  phagophore assembly site  mitophagy  protein binding  mitochondrion  endoplasmic reticulum membrane  cytosol  cytosol  macroautophagy  regulation of macroautophagy  extrinsic component of membrane  protein kinase binding  protein localization to phagophore assembly site  piecemeal microautophagy of the nucleus  positive regulation of protein targeting to mitochondrion  Atg1/ULK1 kinase complex  Atg1/ULK1 kinase complex  
Pathways : KEGGRegulation of autophagy   
NDEx NetworkATG13
Atlas of Cancer Signalling NetworkATG13
Wikipedia pathwaysATG13
Orthology - Evolution
OrthoDB9776
GeneTree (enSembl)ENSG00000175224
Phylogenetic Trees/Animal Genes : TreeFamATG13
Homologs : HomoloGeneATG13
Homology/Alignments : Family Browser (UCSC)ATG13
Gene fusions - Rearrangements
Fusion : QuiverATG13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG13
dbVarATG13
ClinVarATG13
MonarchATG13
1000_GenomesATG13 
Exome Variant ServerATG13
GNOMAD BrowserENSG00000175224
Varsome BrowserATG13
ACMGATG13 variants
VarityO75143
Genomic Variants (DGV)ATG13 [DGVbeta]
DECIPHERATG13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG13 
Mutations
ICGC Data PortalATG13 
TCGA Data PortalATG13 
Broad Tumor PortalATG13
OASIS PortalATG13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATG13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATG13
Mutations and Diseases : HGMDATG13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATG13
DgiDB (Drug Gene Interaction Database)ATG13
DoCM (Curated mutations)ATG13
CIViC (Clinical Interpretations of Variants in Cancer)ATG13
Cancer3DATG13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615088   
Orphanet
DisGeNETATG13
MedgenATG13
Genetic Testing Registry ATG13
NextProtO75143 [Medical]
GENETestsATG13
Target ValidationATG13
Huge Navigator ATG13 [HugePedia]
ClinGenATG13
Clinical trials, drugs, therapy
MyCancerGenomeATG13
Protein Interactions : CTDATG13
Pharm GKB GenePA165543187
PharosO75143
Clinical trialATG13
Miscellaneous
canSAR (ICR)ATG13
HarmonizomeATG13
DataMed IndexATG13
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATG13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:25 CEST 2021

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