Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATG2A (autophagy related 2A)

Identity

Alias_namesATG2 autophagy related 2 homolog A (S. cerevisiae)
Alias_symbol (synonym)KIAA0404
Other alias-
HGNC (Hugo) ATG2A
LocusID (NCBI) 23130
Atlas_Id 60597
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64894532 and ends at 64917250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG2A (11q13.1) / EFCAB6 (22q13.2)ATG2A (11q13.1) / SRRM2 (16p13.3)EHD1 (11q13.1) / ATG2A (11q13.1)
LIMK2 (22q12.2) / ATG2A (11q13.1)MS4A7 (11q12.2) / ATG2A (11q13.1)MS4A7 ATG2A
EHD1 ATG2A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATG2A   29028
Cards
Entrez_Gene (NCBI)ATG2A  23130  autophagy related 2A
Aliases
GeneCards (Weizmann)ATG2A
Ensembl hg19 (Hinxton)ENSG00000110046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110046 [Gene_View]  chr11:64894532-64917250 [Contig_View]  ATG2A [Vega]
ICGC DataPortalENSG00000110046
TCGA cBioPortalATG2A
AceView (NCBI)ATG2A
Genatlas (Paris)ATG2A
WikiGenes23130
SOURCE (Princeton)ATG2A
Genetics Home Reference (NIH)ATG2A
Genomic and cartography
GoldenPath hg38 (UCSC)ATG2A  -     chr11:64894532-64917250 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG2A  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblATG2A - 11q13.1 [CytoView hg19]  ATG2A - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIATG2A [Mapview hg19]  ATG2A [Mapview hg38]
OMIM616225   
Gene and transcription
Genbank (Entrez)AB007864 AI638563 AK126181 AK300925 AK307684
RefSeq transcript (Entrez)NM_015104
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATG2A
Cluster EST : UnigeneHs.370671 [ NCBI ]
CGAP (NCI)Hs.370671
Alternative Splicing GalleryENSG00000110046
Gene ExpressionATG2A [ NCBI-GEO ]   ATG2A [ EBI - ARRAY_EXPRESS ]   ATG2A [ SEEK ]   ATG2A [ MEM ]
Gene Expression Viewer (FireBrowse)ATG2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23130
GTEX Portal (Tissue expression)ATG2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAZ0
Splice isoforms : SwissVarQ2TAZ0
PhosPhoSitePlusQ2TAZ0
Domains : Interpro (EBI)ATG2    ATG2_CAD_motif    Autophagy-rel_C    VPS13_N   
Domain families : Pfam (Sanger)ATG2_CAD (PF13329)    ATG_C (PF09333)    Chorein_N (PF12624)   
Domain families : Pfam (NCBI)pfam13329    pfam09333    pfam12624   
Conserved Domain (NCBI)ATG2A
DMDM Disease mutations23130
Blocks (Seattle)ATG2A
SuperfamilyQ2TAZ0
Human Protein AtlasENSG00000110046
Peptide AtlasQ2TAZ0
HPRD17186
IPIIPI00304926   IPI00878288   IPI00658084   IPI00445332   IPI00807456   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAZ0
IntAct (EBI)Q2TAZ0
FunCoupENSG00000110046
BioGRIDATG2A
STRING (EMBL)ATG2A
ZODIACATG2A
Ontologies - Pathways
QuickGOQ2TAZ0
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  mitophagy  protein binding  nucleus  lipid particle  cytosol  extrinsic component of membrane  pre-autophagosomal structure membrane  intracellular membrane-bounded organelle  nucleophagy  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  mitophagy  protein binding  nucleus  lipid particle  cytosol  extrinsic component of membrane  pre-autophagosomal structure membrane  intracellular membrane-bounded organelle  nucleophagy  
NDEx NetworkATG2A
Atlas of Cancer Signalling NetworkATG2A
Wikipedia pathwaysATG2A
Orthology - Evolution
OrthoDB23130
GeneTree (enSembl)ENSG00000110046
Phylogenetic Trees/Animal Genes : TreeFamATG2A
HOVERGENQ2TAZ0
HOGENOMQ2TAZ0
Homologs : HomoloGeneATG2A
Homology/Alignments : Family Browser (UCSC)ATG2A
Gene fusions - Rearrangements
Fusion: TCGAMS4A7 ATG2A
Fusion: TCGAEHD1 ATG2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG2A
dbVarATG2A
ClinVarATG2A
1000_GenomesATG2A 
Exome Variant ServerATG2A
ExAC (Exome Aggregation Consortium)ATG2A (select the gene name)
Genetic variants : HAPMAP23130
Genomic Variants (DGV)ATG2A [DGVbeta]
DECIPHERATG2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG2A 
Mutations
ICGC Data PortalATG2A 
TCGA Data PortalATG2A 
Broad Tumor PortalATG2A
OASIS PortalATG2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATG2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATG2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATG2A
DgiDB (Drug Gene Interaction Database)ATG2A
DoCM (Curated mutations)ATG2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG2A (select a term)
intoGenATG2A
Cancer3DATG2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616225   
Orphanet
MedgenATG2A
Genetic Testing Registry ATG2A
NextProtQ2TAZ0 [Medical]
TSGene23130
GENETestsATG2A
Target ValidationATG2A
Huge Navigator ATG2A [HugePedia]
snp3D : Map Gene to Disease23130
BioCentury BCIQATG2A
ClinGenATG2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23130
Chemical/Pharm GKB GenePA162377101
Clinical trialATG2A
Miscellaneous
canSAR (ICR)ATG2A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG2A
EVEXATG2A
GoPubMedATG2A
iHOPATG2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:06 CEST 2017

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