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ATG9A (autophagy related 9A)

Identity

Alias_namesAPG9L1
APG9 autophagy 9-like 1 (S. cerevisiae)
ATG9 autophagy related 9 homolog A (S. cerevisiae)
Alias_symbol (synonym)FLJ22169
Other aliasMGD3208
mATG9
HGNC (Hugo) ATG9A
LocusID (NCBI) 79065
Atlas_Id 53804
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219219380 and ends at 219229688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG9A (2q35) / SNTG2 (2p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATG9A   22408
Cards
Entrez_Gene (NCBI)ATG9A  79065  autophagy related 9A
AliasesAPG9L1; MGD3208; mATG9
GeneCards (Weizmann)ATG9A
Ensembl hg19 (Hinxton)ENSG00000198925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198925 [Gene_View]  chr2:219219380-219229688 [Contig_View]  ATG9A [Vega]
ICGC DataPortalENSG00000198925
TCGA cBioPortalATG9A
AceView (NCBI)ATG9A
Genatlas (Paris)ATG9A
WikiGenes79065
SOURCE (Princeton)ATG9A
Genetics Home Reference (NIH)ATG9A
Genomic and cartography
GoldenPath hg38 (UCSC)ATG9A  -     chr2:219219380-219229688 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG9A  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblATG9A - 2q35 [CytoView hg19]  ATG9A - 2q35 [CytoView hg38]
Mapping of homologs : NCBIATG9A [Mapview hg19]  ATG9A [Mapview hg38]
OMIM612204   
Gene and transcription
Genbank (Entrez)AK021732 AK025822 AK027448 AK056595 AK289755
RefSeq transcript (Entrez)NM_001077198 NM_024085
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATG9A
Cluster EST : UnigeneHs.323363 [ NCBI ]
CGAP (NCI)Hs.323363
Alternative Splicing GalleryENSG00000198925
Gene ExpressionATG9A [ NCBI-GEO ]   ATG9A [ EBI - ARRAY_EXPRESS ]   ATG9A [ SEEK ]   ATG9A [ MEM ]
Gene Expression Viewer (FireBrowse)ATG9A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79065
GTEX Portal (Tissue expression)ATG9A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3C6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3C6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3C6
Splice isoforms : SwissVarQ7Z3C6
PhosPhoSitePlusQ7Z3C6
Domains : Interpro (EBI)Autophagy-rel_prot_9   
Domain families : Pfam (Sanger)APG9 (PF04109)   
Domain families : Pfam (NCBI)pfam04109   
Conserved Domain (NCBI)ATG9A
DMDM Disease mutations79065
Blocks (Seattle)ATG9A
SuperfamilyQ7Z3C6
Human Protein AtlasENSG00000198925
Peptide AtlasQ7Z3C6
HPRD07979
IPIIPI00383396   IPI00555659   IPI00439694   IPI00917625   IPI00916234   IPI00917317   IPI00917201   IPI00916010   IPI00915836   IPI00918016   IPI00917846   IPI00916519   IPI00916342   IPI00916599   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3C6
IntAct (EBI)Q7Z3C6
FunCoupENSG00000198925
BioGRIDATG9A
STRING (EMBL)ATG9A
ZODIACATG9A
Ontologies - Pathways
QuickGOQ7Z3C6
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  autophagosome membrane  mitophagy  protein binding  endosome  late endosome  autophagosome  endoplasmic reticulum membrane  trans-Golgi network  protein transport  membrane  integral component of membrane  response to nutrient levels  late endosome membrane  protein localization to pre-autophagosomal structure  piecemeal microautophagy of nucleus  intracellular membrane-bounded organelle  late nucleophagy  recycling endosome  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  autophagosome membrane  mitophagy  protein binding  endosome  late endosome  autophagosome  endoplasmic reticulum membrane  trans-Golgi network  protein transport  membrane  integral component of membrane  response to nutrient levels  late endosome membrane  protein localization to pre-autophagosomal structure  piecemeal microautophagy of nucleus  intracellular membrane-bounded organelle  late nucleophagy  recycling endosome  
NDEx NetworkATG9A
Atlas of Cancer Signalling NetworkATG9A
Wikipedia pathwaysATG9A
Orthology - Evolution
OrthoDB79065
GeneTree (enSembl)ENSG00000198925
Phylogenetic Trees/Animal Genes : TreeFamATG9A
HOVERGENQ7Z3C6
HOGENOMQ7Z3C6
Homologs : HomoloGeneATG9A
Homology/Alignments : Family Browser (UCSC)ATG9A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG9A
dbVarATG9A
ClinVarATG9A
1000_GenomesATG9A 
Exome Variant ServerATG9A
ExAC (Exome Aggregation Consortium)ATG9A (select the gene name)
Genetic variants : HAPMAP79065
Genomic Variants (DGV)ATG9A [DGVbeta]
DECIPHERATG9A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG9A 
Mutations
ICGC Data PortalATG9A 
TCGA Data PortalATG9A 
Broad Tumor PortalATG9A
OASIS PortalATG9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATG9A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATG9A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATG9A
DgiDB (Drug Gene Interaction Database)ATG9A
DoCM (Curated mutations)ATG9A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG9A (select a term)
intoGenATG9A
Cancer3DATG9A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612204   
Orphanet
MedgenATG9A
Genetic Testing Registry ATG9A
NextProtQ7Z3C6 [Medical]
TSGene79065
GENETestsATG9A
Target ValidationATG9A
Huge Navigator ATG9A [HugePedia]
snp3D : Map Gene to Disease79065
BioCentury BCIQATG9A
ClinGenATG9A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79065
Chemical/Pharm GKB GenePA134931318
Clinical trialATG9A
Miscellaneous
canSAR (ICR)ATG9A (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG9A
EVEXATG9A
GoPubMedATG9A
iHOPATG9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:58:27 CEST 2017

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