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ATG9B (autophagy related 9B)

Identity

Other aliasAPG9L2
NOS3AS
SONE
HGNC (Hugo) ATG9B
LocusID (NCBI) 285973
Atlas_Id 56748
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151015151 and ends at 151024499 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATG9B   21899
Cards
Entrez_Gene (NCBI)ATG9B  285973  autophagy related 9B
AliasesAPG9L2; NOS3AS; SONE
GeneCards (Weizmann)ATG9B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:151015151-151024499 [Contig_View]  ATG9B [Vega]
TCGA cBioPortalATG9B
AceView (NCBI)ATG9B
Genatlas (Paris)ATG9B
WikiGenes285973
SOURCE (Princeton)ATG9B
Genetics Home Reference (NIH)ATG9B
Genomic and cartography
GoldenPath hg38 (UCSC)ATG9B  -     chr7:151015151-151024499 -  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATG9B  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblATG9B - 7q36.1 [CytoView hg19]  ATG9B - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIATG9B [Mapview hg19]  ATG9B [Mapview hg38]
OMIM612205   
Gene and transcription
Genbank (Entrez)AI221785 AI243432 AI827483 AK096734 AY316116
RefSeq transcript (Entrez)NM_001317056 NM_173681
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATG9B
Cluster EST : UnigeneHs.716846 [ NCBI ]
CGAP (NCI)Hs.716846
Gene ExpressionATG9B [ NCBI-GEO ]   ATG9B [ EBI - ARRAY_EXPRESS ]   ATG9B [ SEEK ]   ATG9B [ MEM ]
Gene Expression Viewer (FireBrowse)ATG9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285973
GTEX Portal (Tissue expression)ATG9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ674R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ674R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ674R7
Splice isoforms : SwissVarQ674R7
PhosPhoSitePlusQ674R7
Domains : Interpro (EBI)Autophagy-rel_prot_9   
Domain families : Pfam (Sanger)APG9 (PF04109)   
Domain families : Pfam (NCBI)pfam04109   
Conserved Domain (NCBI)ATG9B
DMDM Disease mutations285973
Blocks (Seattle)ATG9B
SuperfamilyQ674R7
Peptide AtlasQ674R7
IPIIPI00465328   IPI00827670   IPI00747506   IPI01011164   IPI01018971   
Protein Interaction databases
DIP (DOE-UCLA)Q674R7
IntAct (EBI)Q674R7
BioGRIDATG9B
STRING (EMBL)ATG9B
ZODIACATG9B
Ontologies - Pathways
QuickGOQ674R7
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  autophagosome membrane  mitophagy  autophagosome  integral component of membrane  cytoplasmic vesicle  protein localization to pre-autophagosomal structure  piecemeal microautophagy of nucleus  late nucleophagy  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  autophagosome membrane  mitophagy  autophagosome  integral component of membrane  cytoplasmic vesicle  protein localization to pre-autophagosomal structure  piecemeal microautophagy of nucleus  late nucleophagy  
NDEx NetworkATG9B
Atlas of Cancer Signalling NetworkATG9B
Wikipedia pathwaysATG9B
Orthology - Evolution
OrthoDB285973
Phylogenetic Trees/Animal Genes : TreeFamATG9B
HOVERGENQ674R7
HOGENOMQ674R7
Homologs : HomoloGeneATG9B
Homology/Alignments : Family Browser (UCSC)ATG9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATG9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATG9B
dbVarATG9B
ClinVarATG9B
1000_GenomesATG9B 
Exome Variant ServerATG9B
ExAC (Exome Aggregation Consortium)ATG9B (select the gene name)
Genetic variants : HAPMAP285973
Genomic Variants (DGV)ATG9B [DGVbeta]
DECIPHERATG9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATG9B 
Mutations
ICGC Data PortalATG9B 
TCGA Data PortalATG9B 
Broad Tumor PortalATG9B
OASIS PortalATG9B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATG9B
BioMutasearch ATG9B
DgiDB (Drug Gene Interaction Database)ATG9B
DoCM (Curated mutations)ATG9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATG9B (select a term)
intoGenATG9B
Cancer3DATG9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612205   
Orphanet
MedgenATG9B
Genetic Testing Registry ATG9B
NextProtQ674R7 [Medical]
TSGene285973
GENETestsATG9B
Target ValidationATG9B
Huge Navigator ATG9B [HugePedia]
snp3D : Map Gene to Disease285973
BioCentury BCIQATG9B
ClinGenATG9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285973
Chemical/Pharm GKB GenePA134883165
Clinical trialATG9B
Miscellaneous
canSAR (ICR)ATG9B (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATG9B
EVEXATG9B
GoPubMedATG9B
iHOPATG9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:47 CEST 2017

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