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ATMIN (ATM interactor)

Identity

Other namesASCIZ
ZNF822
HGNC (Hugo) ATMIN
LocusID (NCBI) 23300
Location 16q23.2
Location_base_pair Starts at 81069458 and ends at 81080951 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATMIN   29034
Entrez_Gene (NCBI)ATMIN  23300  ATM interactor
Cards
GeneCards (Weizmann)ATMIN
Ensembl (Hinxton)ENSG00000166454 [Gene_View]  chr16:81069458-81080951 [Contig_View]  ATMIN [Vega]
AceView (NCBI)ATMIN
Genatlas (Paris)ATMIN
SOURCE (Stanford)NM_015251
Genomic and cartography
GoldenPath (UCSC)ATMIN  -  16q23.2   chr16:81069458-81080951 +  16q23.2   [Description]    (hg19-Feb_2009)
EnsemblATMIN - 16q23.2 [CytoView]
Mapping of homologs : NCBIATMIN [Mapview]
OMIM614693   
Gene and transcription
Genbank (Entrez)AB007891 AK025058 AK290943 AK301781 AK302556
RefSeq transcript (SRS)NM_015251
RefSeq transcript (Entrez)NM_015251
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838328 NW_004078087
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838328 NW_004078087
Consensus coding sequences : CCDS (NCBI)ATMIN
Cluster EST : UnigeneHs.589959 [ SRS ] Hs.589959 [ NCBI ]
CGAP (NCI)Hs.589959
Alternative Splicing : Fast-db (Paris)GSHG0011380
Alternative Splicing GalleryENSG00000166454
Gene ExpressionATMIN [ NCBI-GEO ]   ATMIN [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43313 (SRS) O43313 (Uniprot)
NextProtO43313
With graphics : InterProO43313
Splice isoforms : SwissVarO43313(Swissvar)
Domaine pattern : Prosite (SRS)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Znf_C2H2    Znf_C2H2-like   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Related proteins : CluSTrO43313
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM23300
Blocks (Seattle)O43313
Human Protein AtlasENSG00000166454
HPRD17188
IPIIPI00639881   IPI00401923   
Protein Interaction databases
DIP (DOE-UCLA)O43313
IntAct (EBI)O43313
FunCoupENSG00000166454
REACTOMEATMIN
Protein Interaction Database23300
BioGRIDATMIN
InParanoidO43313
Interologous Interaction database O43313
IntegromeDBATMIN
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ATMIN
SNP (GeneSNP Utah)ATMIN
SNP : HGBaseATMIN
Genetic variants : HAPMAPATMIN
Somatic Mutations in Cancer : COSMICATMIN 
CONAN: Copy Number AnalysisATMIN 
Mutations and Diseases : HGMDATMIN
OMIM614693   
GENETests614693   
Disease Genetic AssociationATMIN
Huge Navigator ATMIN [HugePedia]  ATMIN [HugeCancerGEM]
Genomic VariantsATMIN  ATMIN [DGVbeta]
ClinVarATMIN
snp3D : Map Gene to Disease23300
General knowledge
Homologs : HomoloGeneATMIN
Homology/Alignments : Family Browser (UCSC)ATMIN
Phylogenetic Trees/Animal Genes : TreeFamATMIN
Chemical/Protein Interactions : CTD23300
Chemical/Pharm GKB GenePA162377191
Clinical trialATMIN
Cancer Resource (Charite)ENSG00000166454
Ontology : AmiGOnucleus  transcription, DNA-dependent  response to DNA damage stimulus  zinc ion binding  transcription regulatory region DNA binding  dynein binding  positive regulation of transcription, DNA-dependent  
Ontology : EGO-EBInucleus  transcription, DNA-dependent  response to DNA damage stimulus  zinc ion binding  transcription regulatory region DNA binding  dynein binding  positive regulation of transcription, DNA-dependent  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneATMIN
iHOPATMIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 18:00:45 CEST 2013
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