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ATOH7 (atonal bHLH transcription factor 7)

Identity

Alias_namesatonal homolog 7 (Drosophila)
atonal homolog bHLH transcription factor 7
Alias_symbol (synonym)Math5
bHLHa13
Other aliasNCRNA
PHPVAR
RNANC
HGNC (Hugo) ATOH7
LocusID (NCBI) 220202
Atlas_Id 60606
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 68230595 and ends at 68232113 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATOH7   13907
Cards
Entrez_Gene (NCBI)ATOH7  220202  atonal bHLH transcription factor 7
AliasesMath5; NCRNA; PHPVAR; RNANC; 
bHLHa13
GeneCards (Weizmann)ATOH7
Ensembl hg19 (Hinxton)ENSG00000179774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179774 [Gene_View]  chr10:68230595-68232113 [Contig_View]  ATOH7 [Vega]
ICGC DataPortalENSG00000179774
TCGA cBioPortalATOH7
AceView (NCBI)ATOH7
Genatlas (Paris)ATOH7
WikiGenes220202
SOURCE (Princeton)ATOH7
Genetics Home Reference (NIH)ATOH7
Genomic and cartography
GoldenPath hg38 (UCSC)ATOH7  -     chr10:68230595-68232113 -  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATOH7  -     10q21.3   [Description]    (hg19-Feb_2009)
EnsemblATOH7 - 10q21.3 [CytoView hg19]  ATOH7 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIATOH7 [Mapview hg19]  ATOH7 [Mapview hg38]
OMIM609875   
Gene and transcription
Genbank (Entrez)AB593108 AB593109 BC032621 BK000277 BY797167
RefSeq transcript (Entrez)NM_145178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATOH7
Cluster EST : UnigeneHs.737072 [ NCBI ]
CGAP (NCI)Hs.737072
Alternative Splicing GalleryENSG00000179774
Gene ExpressionATOH7 [ NCBI-GEO ]   ATOH7 [ EBI - ARRAY_EXPRESS ]   ATOH7 [ SEEK ]   ATOH7 [ MEM ]
Gene Expression Viewer (FireBrowse)ATOH7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220202
GTEX Portal (Tissue expression)ATOH7
Human Protein AtlasENSG00000179774-ATOH7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N100   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N100  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N100
Splice isoforms : SwissVarQ8N100
PhosPhoSitePlusQ8N100
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)Atoh7    bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)ATOH7
DMDM Disease mutations220202
Blocks (Seattle)ATOH7
SuperfamilyQ8N100
Human Protein Atlas [tissue]ENSG00000179774-ATOH7 [tissue]
Peptide AtlasQ8N100
HPRD09812
IPIIPI00166032   
Protein Interaction databases
DIP (DOE-UCLA)Q8N100
IntAct (EBI)Q8N100
FunCoupENSG00000179774
BioGRIDATOH7
STRING (EMBL)ATOH7
ZODIACATOH7
Ontologies - Pathways
QuickGOQ8N100
Ontology : AmiGOneural retina development  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  circadian rhythm  entrainment of circadian clock  optic nerve development  cell differentiation  protein dimerization activity  
Ontology : EGO-EBIneural retina development  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  circadian rhythm  entrainment of circadian clock  optic nerve development  cell differentiation  protein dimerization activity  
NDEx NetworkATOH7
Atlas of Cancer Signalling NetworkATOH7
Wikipedia pathwaysATOH7
Orthology - Evolution
OrthoDB220202
GeneTree (enSembl)ENSG00000179774
Phylogenetic Trees/Animal Genes : TreeFamATOH7
HOVERGENQ8N100
HOGENOMQ8N100
Homologs : HomoloGeneATOH7
Homology/Alignments : Family Browser (UCSC)ATOH7
Gene fusions - Rearrangements
Tumor Fusion PortalATOH7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATOH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATOH7
dbVarATOH7
ClinVarATOH7
1000_GenomesATOH7 
Exome Variant ServerATOH7
ExAC (Exome Aggregation Consortium)ENSG00000179774
GNOMAD BrowserENSG00000179774
Genetic variants : HAPMAP220202
Genomic Variants (DGV)ATOH7 [DGVbeta]
DECIPHERATOH7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATOH7 
Mutations
ICGC Data PortalATOH7 
TCGA Data PortalATOH7 
Broad Tumor PortalATOH7
OASIS PortalATOH7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATOH7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATOH7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATOH7
DgiDB (Drug Gene Interaction Database)ATOH7
DoCM (Curated mutations)ATOH7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATOH7 (select a term)
intoGenATOH7
Cancer3DATOH7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609875   
Orphanet20730    12154   
DisGeNETATOH7
MedgenATOH7
Genetic Testing Registry ATOH7
NextProtQ8N100 [Medical]
TSGene220202
GENETestsATOH7
Target ValidationATOH7
Huge Navigator ATOH7 [HugePedia]
snp3D : Map Gene to Disease220202
BioCentury BCIQATOH7
ClinGenATOH7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220202
Chemical/Pharm GKB GenePA38369
Clinical trialATOH7
Miscellaneous
canSAR (ICR)ATOH7 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATOH7
EVEXATOH7
GoPubMedATOH7
iHOPATOH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:10 CET 2017

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