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ATOH7 (atonal bHLH transcription factor 7)

Identity

Alias (NCBI)Math5
NCRNA
PHPVAR
RNANC
bHLHa13
HGNC (Hugo) ATOH7
HGNC Alias symbMath5
bHLHa13
HGNC Previous nameatonal homolog 7 (Drosophila)
 atonal homolog bHLH transcription factor 7
LocusID (NCBI) 220202
Atlas_Id 60606
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 68230595 and ends at 68232113 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ATOH7   13907
Cards
Entrez_Gene (NCBI)ATOH7    atonal bHLH transcription factor 7
AliasesMath5; NCRNA; PHPVAR; RNANC; 
bHLHa13
GeneCards (Weizmann)ATOH7
Ensembl hg19 (Hinxton)ENSG00000179774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179774 [Gene_View]  ENSG00000179774 [Sequence]  chr10:68230595-68232113 [Contig_View]  ATOH7 [Vega]
ICGC DataPortalENSG00000179774
TCGA cBioPortalATOH7
AceView (NCBI)ATOH7
Genatlas (Paris)ATOH7
SOURCE (Princeton)ATOH7
Genetics Home Reference (NIH)ATOH7
Genomic and cartography
GoldenPath hg38 (UCSC)ATOH7  -     chr10:68230595-68232113 -  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATOH7  -     10q21.3   [Description]    (hg19-Feb_2009)
GoldenPathATOH7 - 10q21.3 [CytoView hg19]  ATOH7 - 10q21.3 [CytoView hg38]
ImmunoBaseENSG00000179774
Genome Data Viewer NCBIATOH7 [Mapview hg19]  
OMIM221900   609875   
Gene and transcription
Genbank (Entrez)AB593108 AB593109 BC032621 BK000277 BY797167
RefSeq transcript (Entrez)NM_145178
Consensus coding sequences : CCDS (NCBI)ATOH7
Gene ExpressionATOH7 [ NCBI-GEO ]   ATOH7 [ EBI - ARRAY_EXPRESS ]   ATOH7 [ SEEK ]   ATOH7 [ MEM ]
Gene Expression Viewer (FireBrowse)ATOH7 [ Firebrowse - Broad ]
GenevisibleExpression of ATOH7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220202
GTEX Portal (Tissue expression)ATOH7
Human Protein AtlasENSG00000179774-ATOH7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N100   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N100  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N100
PhosPhoSitePlusQ8N100
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)Atoh7    bHLH_dom    HLH_DNA-bd_sf   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)ATOH7
SuperfamilyQ8N100
AlphaFold pdb e-kbQ8N100   
Human Protein Atlas [tissue]ENSG00000179774-ATOH7 [tissue]
HPRD09812
Protein Interaction databases
DIP (DOE-UCLA)Q8N100
IntAct (EBI)Q8N100
BioGRIDATOH7
STRING (EMBL)ATOH7
ZODIACATOH7
Ontologies - Pathways
QuickGOQ8N100
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  neural retina development  protein binding  nucleus  regulation of transcription by RNA polymerase II  circadian rhythm  optic nerve development  neuron differentiation  entrainment of circadian clock by photoperiod  protein dimerization activity  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  neural retina development  protein binding  nucleus  regulation of transcription by RNA polymerase II  circadian rhythm  optic nerve development  neuron differentiation  entrainment of circadian clock by photoperiod  protein dimerization activity  sequence-specific double-stranded DNA binding  
NDEx NetworkATOH7
Atlas of Cancer Signalling NetworkATOH7
Wikipedia pathwaysATOH7
Orthology - Evolution
OrthoDB220202
GeneTree (enSembl)ENSG00000179774
Phylogenetic Trees/Animal Genes : TreeFamATOH7
Homologs : HomoloGeneATOH7
Homology/Alignments : Family Browser (UCSC)ATOH7
Gene fusions - Rearrangements
Fusion : QuiverATOH7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATOH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATOH7
dbVarATOH7
ClinVarATOH7
MonarchATOH7
1000_GenomesATOH7 
Exome Variant ServerATOH7
GNOMAD BrowserENSG00000179774
Varsome BrowserATOH7
ACMGATOH7 variants
VarityQ8N100
Genomic Variants (DGV)ATOH7 [DGVbeta]
DECIPHERATOH7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATOH7 
Mutations
ICGC Data PortalATOH7 
TCGA Data PortalATOH7 
Broad Tumor PortalATOH7
OASIS PortalATOH7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATOH7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATOH7
Mutations and Diseases : HGMDATOH7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATOH7
DgiDB (Drug Gene Interaction Database)ATOH7
DoCM (Curated mutations)ATOH7
CIViC (Clinical Interpretations of Variants in Cancer)ATOH7
Cancer3DATOH7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM221900    609875   
Orphanet20730    12154   
DisGeNETATOH7
MedgenATOH7
Genetic Testing Registry ATOH7
NextProtQ8N100 [Medical]
GENETestsATOH7
Target ValidationATOH7
Huge Navigator ATOH7 [HugePedia]
ClinGenATOH7
Clinical trials, drugs, therapy
MyCancerGenomeATOH7
Protein Interactions : CTDATOH7
Pharm GKB GenePA38369
PharosQ8N100
Clinical trialATOH7
Miscellaneous
canSAR (ICR)ATOH7
HarmonizomeATOH7
DataMed IndexATOH7
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATOH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:42:51 CEST 2021

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