Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATP10A (ATPase phospholipid transporting 10A (putative))

Identity

Alias_namesATP10C
ATPase, Class V, type 10C
ATPase, Class V, type 10A
Alias_symbol (synonym)ATPVA
ATPVC
KIAA0566
Other alias
HGNC (Hugo) ATP10A
LocusID (NCBI) 57194
Atlas_Id 52396
Location 15q12  [Link to chromosome band 15q12]
Location_base_pair Starts at 25678713 and ends at 25863202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C12orf49 (12q24.22) / ATP10A (15q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATP10A   13542
Cards
Entrez_Gene (NCBI)ATP10A  57194  ATPase phospholipid transporting 10A (putative)
AliasesATP10C; ATPVA; ATPVC
GeneCards (Weizmann)ATP10A
Ensembl hg19 (Hinxton)ENSG00000206190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206190 [Gene_View]  ENSG00000206190 [Sequence]  chr15:25678713-25863202 [Contig_View]  ATP10A [Vega]
ICGC DataPortalENSG00000206190
TCGA cBioPortalATP10A
AceView (NCBI)ATP10A
Genatlas (Paris)ATP10A
WikiGenes57194
SOURCE (Princeton)ATP10A
Genetics Home Reference (NIH)ATP10A
Genomic and cartography
GoldenPath hg38 (UCSC)ATP10A  -     chr15:25678713-25863202 -  15q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP10A  -     15q12   [Description]    (hg19-Feb_2009)
EnsemblATP10A - 15q12 [CytoView hg19]  ATP10A - 15q12 [CytoView hg38]
Mapping of homologs : NCBIATP10A [Mapview hg19]  ATP10A [Mapview hg38]
OMIM605855   
Gene and transcription
Genbank (Entrez)AB011138 AB051358 AK091793 BC038712 BC052251
RefSeq transcript (Entrez)NM_024490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP10A
Cluster EST : UnigeneHs.659258 [ NCBI ]
CGAP (NCI)Hs.659258
Alternative Splicing GalleryENSG00000206190
Gene ExpressionATP10A [ NCBI-GEO ]   ATP10A [ EBI - ARRAY_EXPRESS ]   ATP10A [ SEEK ]   ATP10A [ MEM ]
Gene Expression Viewer (FireBrowse)ATP10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57194
GTEX Portal (Tissue expression)ATP10A
Human Protein AtlasENSG00000206190-ATP10A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60312   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60312  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60312
Splice isoforms : SwissVarO60312
Catalytic activity : Enzyme3.6.3.1 [ Enzyme-Expasy ]   3.6.3.13.6.3.1 [ IntEnz-EBI ]   3.6.3.1 [ BRENDA ]   3.6.3.1 [ KEGG ]   
PhosPhoSitePlusO60312
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP10A/ATP10C    ATPase_P-typ_cyto_dom_N    ATPase_P-typ_P_site    ATPase_P-typ_TM_dom_sf    ATPase_P-typ_transduc_dom_A_sf    HAD-like_sf    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam16212    pfam16209   
Conserved Domain (NCBI)ATP10A
DMDM Disease mutations57194
Blocks (Seattle)ATP10A
SuperfamilyO60312
Human Protein Atlas [tissue]ENSG00000206190-ATP10A [tissue]
Peptide AtlasO60312
HPRD05790
IPIIPI00783442   IPI00789738   IPI01024743   IPI01024867   
Protein Interaction databases
DIP (DOE-UCLA)O60312
IntAct (EBI)O60312
FunCoupENSG00000206190
BioGRIDATP10A
STRING (EMBL)ATP10A
ZODIACATP10A
Ontologies - Pathways
QuickGOO60312
Ontology : AmiGOmagnesium ion binding  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  protein binding  ATP binding  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  plasma membrane  regulation of cell shape  integral component of membrane  ion transmembrane transport  phospholipid translocation  phospholipid translocation  
Ontology : EGO-EBImagnesium ion binding  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  protein binding  ATP binding  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  plasma membrane  regulation of cell shape  integral component of membrane  ion transmembrane transport  phospholipid translocation  phospholipid translocation  
NDEx NetworkATP10A
Atlas of Cancer Signalling NetworkATP10A
Wikipedia pathwaysATP10A
Orthology - Evolution
OrthoDB57194
GeneTree (enSembl)ENSG00000206190
Phylogenetic Trees/Animal Genes : TreeFamATP10A
HOVERGENO60312
HOGENOMO60312
Homologs : HomoloGeneATP10A
Homology/Alignments : Family Browser (UCSC)ATP10A
Gene fusions - Rearrangements
Fusion : QuiverATP10A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP10A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP10A
dbVarATP10A
ClinVarATP10A
1000_GenomesATP10A 
Exome Variant ServerATP10A
ExAC (Exome Aggregation Consortium)ENSG00000206190
GNOMAD BrowserENSG00000206190
Varsome BrowserATP10A
Genetic variants : HAPMAP57194
Genomic Variants (DGV)ATP10A [DGVbeta]
DECIPHERATP10A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP10A 
Mutations
ICGC Data PortalATP10A 
TCGA Data PortalATP10A 
Broad Tumor PortalATP10A
OASIS PortalATP10A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP10A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP10A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP10A
DgiDB (Drug Gene Interaction Database)ATP10A
DoCM (Curated mutations)ATP10A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP10A (select a term)
intoGenATP10A
Cancer3DATP10A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605855   
Orphanet23015   
DisGeNETATP10A
MedgenATP10A
Genetic Testing Registry ATP10A
NextProtO60312 [Medical]
TSGene57194
GENETestsATP10A
Target ValidationATP10A
Huge Navigator ATP10A [HugePedia]
snp3D : Map Gene to Disease57194
BioCentury BCIQATP10A
ClinGenATP10A (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57194
Chemical/Pharm GKB GenePA25097
Clinical trialATP10A
Miscellaneous
canSAR (ICR)ATP10A (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP10A
EVEXATP10A
GoPubMedATP10A
iHOPATP10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:52:54 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.