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ATP10D (ATPase phospholipid transporting 10D (putative))

Identity

Alias_namesATPase
Alias_symbol (synonym)ATPVD
KIAA1487
Other alias
HGNC (Hugo) ATP10D
LocusID (NCBI) 57205
Atlas_Id 52441
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 47485393 and ends at 47593486 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP10D (4p12) / GABRB1 (4p12)ATP10D 4p12 / GABRB1 4p12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP10D   13549
Cards
Entrez_Gene (NCBI)ATP10D  57205  ATPase phospholipid transporting 10D (putative)
AliasesATPVD
GeneCards (Weizmann)ATP10D
Ensembl hg19 (Hinxton)ENSG00000145246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145246 [Gene_View]  chr4:47485393-47593486 [Contig_View]  ATP10D [Vega]
ICGC DataPortalENSG00000145246
TCGA cBioPortalATP10D
AceView (NCBI)ATP10D
Genatlas (Paris)ATP10D
WikiGenes57205
SOURCE (Princeton)ATP10D
Genetics Home Reference (NIH)ATP10D
Genomic and cartography
GoldenPath hg38 (UCSC)ATP10D  -     chr4:47485393-47593486 +  4p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP10D  -     4p12   [Description]    (hg19-Feb_2009)
EnsemblATP10D - 4p12 [CytoView hg19]  ATP10D - 4p12 [CytoView hg38]
Mapping of homologs : NCBIATP10D [Mapview hg19]  ATP10D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040920 AJ441078 AK027598 AK074930 BC057839
RefSeq transcript (Entrez)NM_020453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP10D
Cluster EST : UnigeneHs.437241 [ NCBI ]
CGAP (NCI)Hs.437241
Alternative Splicing GalleryENSG00000145246
Gene ExpressionATP10D [ NCBI-GEO ]   ATP10D [ EBI - ARRAY_EXPRESS ]   ATP10D [ SEEK ]   ATP10D [ MEM ]
Gene Expression Viewer (FireBrowse)ATP10D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57205
GTEX Portal (Tissue expression)ATP10D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P241   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P241  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P241
Splice isoforms : SwissVarQ9P241
Catalytic activity : Enzyme3.6.3.1 [ Enzyme-Expasy ]   3.6.3.13.6.3.1 [ IntEnz-EBI ]   3.6.3.1 [ BRENDA ]   3.6.3.1 [ KEGG ]   
PhosPhoSitePlusQ9P241
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP10D    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)E1-E2_ATPase (PF00122)    PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam00122    pfam16212    pfam16209   
Conserved Domain (NCBI)ATP10D
DMDM Disease mutations57205
Blocks (Seattle)ATP10D
SuperfamilyQ9P241
Human Protein AtlasENSG00000145246
Peptide AtlasQ9P241
HPRD16518
IPIIPI00001723   IPI00216521   IPI00967540   IPI00967836   
Protein Interaction databases
DIP (DOE-UCLA)Q9P241
IntAct (EBI)Q9P241
FunCoupENSG00000145246
BioGRIDATP10D
STRING (EMBL)ATP10D
ZODIACATP10D
Ontologies - Pathways
QuickGOQ9P241
Ontology : AmiGOmagnesium ion binding  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  protein binding  ATP binding  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  plasma membrane  plasma membrane  cation transport  integral component of membrane  ion transmembrane transport  phospholipid translocation  
Ontology : EGO-EBImagnesium ion binding  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  protein binding  ATP binding  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  plasma membrane  plasma membrane  cation transport  integral component of membrane  ion transmembrane transport  phospholipid translocation  
NDEx NetworkATP10D
Atlas of Cancer Signalling NetworkATP10D
Wikipedia pathwaysATP10D
Orthology - Evolution
OrthoDB57205
GeneTree (enSembl)ENSG00000145246
Phylogenetic Trees/Animal Genes : TreeFamATP10D
HOVERGENQ9P241
HOGENOMQ9P241
Homologs : HomoloGeneATP10D
Homology/Alignments : Family Browser (UCSC)ATP10D
Gene fusions - Rearrangements
Fusion: TCGAATP10D 4p12 GABRB1 4p12 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP10D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP10D
dbVarATP10D
ClinVarATP10D
1000_GenomesATP10D 
Exome Variant ServerATP10D
ExAC (Exome Aggregation Consortium)ATP10D (select the gene name)
Genetic variants : HAPMAP57205
Genomic Variants (DGV)ATP10D [DGVbeta]
DECIPHERATP10D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP10D 
Mutations
ICGC Data PortalATP10D 
TCGA Data PortalATP10D 
Broad Tumor PortalATP10D
OASIS PortalATP10D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP10D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP10D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP10D
DgiDB (Drug Gene Interaction Database)ATP10D
DoCM (Curated mutations)ATP10D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP10D (select a term)
intoGenATP10D
Cancer3DATP10D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP10D
Genetic Testing Registry ATP10D
NextProtQ9P241 [Medical]
TSGene57205
GENETestsATP10D
Target ValidationATP10D
Huge Navigator ATP10D [HugePedia]
snp3D : Map Gene to Disease57205
BioCentury BCIQATP10D
ClinGenATP10D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57205
Chemical/Pharm GKB GenePA25100
Clinical trialATP10D
Miscellaneous
canSAR (ICR)ATP10D (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP10D
EVEXATP10D
GoPubMedATP10D
iHOPATP10D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:58:29 CEST 2017

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