Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATP11A (ATPase phospholipid transporting 11A)

Identity

Alias (NCBI)ATPIH
ATPIS
HGNC (Hugo) ATP11A
HGNC Alias symbATPIH
ATPIS
KIAA1021
HGNC Alias namepotential phospholipid-transporting ATPase IH
 phospholipid-translocating ATPase
HGNC Previous nameATPase, Class VI, type 11A
LocusID (NCBI) 23250
Atlas_Id 51420
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 112690329 and ends at 112887168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF7 (13q34) / ATP11A (13q34)ATP11A (13q34) / ATP11A (13q34)ATP11A (13q34) / ATP11AUN (13q34)
ATP11A (13q34) / DHX38 (16q22.2)ATP11A (13q34) / TUBGCP3 (13q34)FAM155A (13q33.3) / ATP11A (13q34)
LSM4 (19p13.11) / ATP11A (13q34)TUBGCP3 (13q34) / ATP11A (13q34)WWOX (16q23.1) / ATP11A (13q34)
ARHGEF7 13q34 / ATP11A 13q34ATP11A 13q34 C13orf35ATP11A 13q34 / TUBGCP3 13q34
TUBGCP3 13q34 / ATP11A 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATP11A   13552
Cards
Entrez_Gene (NCBI)ATP11A    ATPase phospholipid transporting 11A
AliasesATPIH; ATPIS
GeneCards (Weizmann)ATP11A
Ensembl hg19 (Hinxton)ENSG00000068650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068650 [Gene_View]  ENSG00000068650 [Sequence]  chr13:112690329-112887168 [Contig_View]  ATP11A [Vega]
ICGC DataPortalENSG00000068650
TCGA cBioPortalATP11A
AceView (NCBI)ATP11A
Genatlas (Paris)ATP11A
SOURCE (Princeton)ATP11A
Genetics Home Reference (NIH)ATP11A
Genomic and cartography
GoldenPath hg38 (UCSC)ATP11A  -     chr13:112690329-112887168 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP11A  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathATP11A - 13q34 [CytoView hg19]  ATP11A - 13q34 [CytoView hg38]
ImmunoBaseENSG00000068650
genome Data Viewer NCBIATP11A [Mapview hg19]  
OMIM605868   
Gene and transcription
Genbank (Entrez)AB028944 AI703438 AK024264 AK025511 AK091253
RefSeq transcript (Entrez)NM_015205 NM_032189
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP11A
Alternative Splicing GalleryENSG00000068650
Gene ExpressionATP11A [ NCBI-GEO ]   ATP11A [ EBI - ARRAY_EXPRESS ]   ATP11A [ SEEK ]   ATP11A [ MEM ]
Gene Expression Viewer (FireBrowse)ATP11A [ Firebrowse - Broad ]
GenevisibleExpression of ATP11A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23250
GTEX Portal (Tissue expression)ATP11A
Human Protein AtlasENSG00000068650-ATP11A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98196   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98196  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98196
Splice isoforms : SwissVarP98196
Catalytic activity : Enzyme7.6.2.1 [ Enzyme-Expasy ]   7.6.2.17.6.2.1 [ IntEnz-EBI ]   7.6.2.1 [ BRENDA ]   7.6.2.1 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP98196
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP11A    ATPase_P-typ_cyto_dom_N    ATPase_P-typ_P_site    ATPase_P-typ_TM_dom_sf    ATPase_P-typ_transduc_dom_A_sf    HAD-like_sf    HAD_sf    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam16212    pfam16209   
Conserved Domain (NCBI)ATP11A
Blocks (Seattle)ATP11A
SuperfamilyP98196
Human Protein Atlas [tissue]ENSG00000068650-ATP11A [tissue]
Peptide AtlasP98196
HPRD12059
IPIIPI00255653   IPI00470412   IPI00025144   IPI00456983   IPI00848250   IPI00790554   
Protein Interaction databases
DIP (DOE-UCLA)P98196
IntAct (EBI)P98196
BioGRIDATP11A
STRING (EMBL)ATP11A
ZODIACATP11A
Ontologies - Pathways
QuickGOP98196
Ontology : AmiGOmagnesium ion binding  in utero embryonic development  protein binding  ATP binding  lysosomal membrane  early endosome  endoplasmic reticulum  endoplasmic reticulum  trans-Golgi network  plasma membrane  plasma membrane  membrane  integral component of membrane  specific granule membrane  intracellular membrane-bounded organelle  neutrophil degranulation  phospholipid translocation  phospholipid translocation  recycling endosome  recycling endosome  tertiary granule membrane  
Ontology : EGO-EBImagnesium ion binding  in utero embryonic development  protein binding  ATP binding  lysosomal membrane  early endosome  endoplasmic reticulum  endoplasmic reticulum  trans-Golgi network  plasma membrane  plasma membrane  membrane  integral component of membrane  specific granule membrane  intracellular membrane-bounded organelle  neutrophil degranulation  phospholipid translocation  phospholipid translocation  recycling endosome  recycling endosome  tertiary granule membrane  
NDEx NetworkATP11A
Atlas of Cancer Signalling NetworkATP11A
Wikipedia pathwaysATP11A
Orthology - Evolution
OrthoDB23250
GeneTree (enSembl)ENSG00000068650
Phylogenetic Trees/Animal Genes : TreeFamATP11A
HOGENOMP98196
Homologs : HomoloGeneATP11A
Homology/Alignments : Family Browser (UCSC)ATP11A
Gene fusions - Rearrangements
Fusion PortalARHGEF7 13q34 ATP11A 13q34 LUAD
Fusion PortalATP11A 13q34 C13orf35 KIRC LUAD
Fusion PortalATP11A 13q34 TUBGCP3 13q34 BRCA
Fusion PortalTUBGCP3 13q34 ATP11A 13q34 LUAD
Fusion : QuiverATP11A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP11A [hg38]
dbVarATP11A
ClinVarATP11A
MonarchATP11A
1000_GenomesATP11A 
Exome Variant ServerATP11A
GNOMAD BrowserENSG00000068650
Varsome BrowserATP11A
Genomic Variants (DGV)ATP11A [DGVbeta]
DECIPHERATP11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP11A 
Mutations
ICGC Data PortalATP11A 
TCGA Data PortalATP11A 
Broad Tumor PortalATP11A
OASIS PortalATP11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP11A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP11A
Mutations and Diseases : HGMDATP11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP11A
DgiDB (Drug Gene Interaction Database)ATP11A
DoCM (Curated mutations)ATP11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP11A (select a term)
intoGenATP11A
Cancer3DATP11A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605868   
Orphanet7029   
DisGeNETATP11A
MedgenATP11A
Genetic Testing Registry ATP11A
NextProtP98196 [Medical]
GENETestsATP11A
Target ValidationATP11A
Huge Navigator ATP11A [HugePedia]
ClinGenATP11A
Clinical trials, drugs, therapy
MyCancerGenomeATP11A
Protein Interactions : CTD
Pharm GKB GenePA25101
PharosP98196
Clinical trialATP11A
Miscellaneous
canSAR (ICR)ATP11A (select the gene name)
HarmonizomeATP11A
DataMed IndexATP11A
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATP11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:06:32 CET 2021
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