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ATP11A (ATPase phospholipid transporting 11A)

Identity

Alias_namesATPase
Alias_symbol (synonym)ATPIH
ATPIS
KIAA1021
Other alias
HGNC (Hugo) ATP11A
LocusID (NCBI) 23250
Atlas_Id 51420
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 112690329 and ends at 112887168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGEF7 (13q34) / ATP11A (13q34)ATP11A (13q34) / ATP11A (13q34)ATP11A (13q34) / ATP11AUN (13q34)
ATP11A (13q34) / DHX38 (16q22.2)ATP11A (13q34) / TUBGCP3 (13q34)FAM155A (13q33.3) / ATP11A (13q34)
LSM4 (19p13.11) / ATP11A (13q34)TUBGCP3 (13q34) / ATP11A (13q34)WWOX (16q23.1) / ATP11A (13q34)
ARHGEF7 13q34 / ATP11A 13q34ATP11A 13q34 C13orf35ATP11A 13q34 / TUBGCP3 13q34
TUBGCP3 13q34 / ATP11A 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP11A   13552
Cards
Entrez_Gene (NCBI)ATP11A  23250  ATPase phospholipid transporting 11A
AliasesATPIH; ATPIS
GeneCards (Weizmann)ATP11A
Ensembl hg19 (Hinxton)ENSG00000068650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068650 [Gene_View]  chr13:112690329-112887168 [Contig_View]  ATP11A [Vega]
ICGC DataPortalENSG00000068650
TCGA cBioPortalATP11A
AceView (NCBI)ATP11A
Genatlas (Paris)ATP11A
WikiGenes23250
SOURCE (Princeton)ATP11A
Genetics Home Reference (NIH)ATP11A
Genomic and cartography
GoldenPath hg38 (UCSC)ATP11A  -     chr13:112690329-112887168 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP11A  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblATP11A - 13q34 [CytoView hg19]  ATP11A - 13q34 [CytoView hg38]
Mapping of homologs : NCBIATP11A [Mapview hg19]  ATP11A [Mapview hg38]
OMIM605868   
Gene and transcription
Genbank (Entrez)AB028944 AI703438 AK024264 AK025511 AK091253
RefSeq transcript (Entrez)NM_015205 NM_032189
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP11A
Cluster EST : UnigeneHs.29189 [ NCBI ]
CGAP (NCI)Hs.29189
Alternative Splicing GalleryENSG00000068650
Gene ExpressionATP11A [ NCBI-GEO ]   ATP11A [ EBI - ARRAY_EXPRESS ]   ATP11A [ SEEK ]   ATP11A [ MEM ]
Gene Expression Viewer (FireBrowse)ATP11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23250
GTEX Portal (Tissue expression)ATP11A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98196   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98196  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98196
Splice isoforms : SwissVarP98196
Catalytic activity : Enzyme3.6.3.1 [ Enzyme-Expasy ]   3.6.3.13.6.3.1 [ IntEnz-EBI ]   3.6.3.1 [ BRENDA ]   3.6.3.1 [ KEGG ]   
PhosPhoSitePlusP98196
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP11A    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)E1-E2_ATPase (PF00122)    PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam00122    pfam16212    pfam16209   
Conserved Domain (NCBI)ATP11A
DMDM Disease mutations23250
Blocks (Seattle)ATP11A
SuperfamilyP98196
Human Protein AtlasENSG00000068650
Peptide AtlasP98196
HPRD12059
IPIIPI00255653   IPI00470412   IPI00025144   IPI00456983   IPI00848250   IPI00790554   
Protein Interaction databases
DIP (DOE-UCLA)P98196
IntAct (EBI)P98196
FunCoupENSG00000068650
BioGRIDATP11A
STRING (EMBL)ATP11A
ZODIACATP11A
Ontologies - Pathways
QuickGOP98196
Ontology : AmiGOmagnesium ion binding  phospholipid-translocating ATPase activity  protein binding  ATP binding  lysosomal membrane  early endosome  endoplasmic reticulum  plasma membrane  plasma membrane  membrane  integral component of membrane  specific granule membrane  intracellular membrane-bounded organelle  neutrophil degranulation  phospholipid translocation  recycling endosome  tertiary granule membrane  
Ontology : EGO-EBImagnesium ion binding  phospholipid-translocating ATPase activity  protein binding  ATP binding  lysosomal membrane  early endosome  endoplasmic reticulum  plasma membrane  plasma membrane  membrane  integral component of membrane  specific granule membrane  intracellular membrane-bounded organelle  neutrophil degranulation  phospholipid translocation  recycling endosome  tertiary granule membrane  
NDEx NetworkATP11A
Atlas of Cancer Signalling NetworkATP11A
Wikipedia pathwaysATP11A
Orthology - Evolution
OrthoDB23250
GeneTree (enSembl)ENSG00000068650
Phylogenetic Trees/Animal Genes : TreeFamATP11A
HOVERGENP98196
HOGENOMP98196
Homologs : HomoloGeneATP11A
Homology/Alignments : Family Browser (UCSC)ATP11A
Gene fusions - Rearrangements
Fusion: TCGAARHGEF7 13q34 ATP11A 13q34 LUAD
Fusion: TCGAATP11A 13q34 C13orf35 KIRC LUAD
Fusion: TCGAATP11A 13q34 TUBGCP3 13q34 BRCA
Fusion: TCGATUBGCP3 13q34 ATP11A 13q34 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP11A
dbVarATP11A
ClinVarATP11A
1000_GenomesATP11A 
Exome Variant ServerATP11A
ExAC (Exome Aggregation Consortium)ATP11A (select the gene name)
Genetic variants : HAPMAP23250
Genomic Variants (DGV)ATP11A [DGVbeta]
DECIPHERATP11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP11A 
Mutations
ICGC Data PortalATP11A 
TCGA Data PortalATP11A 
Broad Tumor PortalATP11A
OASIS PortalATP11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP11A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP11A
DgiDB (Drug Gene Interaction Database)ATP11A
DoCM (Curated mutations)ATP11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP11A (select a term)
intoGenATP11A
Cancer3DATP11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605868   
Orphanet7029   
MedgenATP11A
Genetic Testing Registry ATP11A
NextProtP98196 [Medical]
TSGene23250
GENETestsATP11A
Target ValidationATP11A
Huge Navigator ATP11A [HugePedia]
snp3D : Map Gene to Disease23250
BioCentury BCIQATP11A
ClinGenATP11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23250
Chemical/Pharm GKB GenePA25101
Clinical trialATP11A
Miscellaneous
canSAR (ICR)ATP11A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP11A
EVEXATP11A
GoPubMedATP11A
iHOPATP11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:58:29 CEST 2017

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