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ATP11AUN (ATP11A upstream neighbor)

Identity

Alias_namesC13orf35
chromosome 13 open reading frame 35
Alias_symbol (synonym)FLJ26443
SMABLO1
Other alias
HGNC (Hugo) ATP11AUN
LocusID (NCBI) 400165
Atlas_Id 60609
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 112647044 and ends at 112684497 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP11AUN   33793
Cards
Entrez_Gene (NCBI)ATP11AUN  400165  ATP11A upstream neighbor
AliasesC13orf35; SMABLO1
GeneCards (Weizmann)ATP11AUN
Ensembl hg19 (Hinxton)ENSG00000197595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197595 [Gene_View]  chr13:112647044-112684497 [Contig_View]  ATP11AUN [Vega]
ICGC DataPortalENSG00000197595
TCGA cBioPortalATP11AUN
AceView (NCBI)ATP11AUN
Genatlas (Paris)ATP11AUN
WikiGenes400165
SOURCE (Princeton)ATP11AUN
Genetics Home Reference (NIH)ATP11AUN
Genomic and cartography
GoldenPath hg38 (UCSC)ATP11AUN  -     chr13:112647044-112684497 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP11AUN  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblATP11AUN - 13q34 [CytoView hg19]  ATP11AUN - 13q34 [CytoView hg38]
Mapping of homologs : NCBIATP11AUN [Mapview hg19]  ATP11AUN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129953
RefSeq transcript (Entrez)NM_207440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP11AUN
Cluster EST : UnigeneHs.591213 [ NCBI ]
CGAP (NCI)Hs.591213
Alternative Splicing GalleryENSG00000197595
Gene ExpressionATP11AUN [ NCBI-GEO ]   ATP11AUN [ EBI - ARRAY_EXPRESS ]   ATP11AUN [ SEEK ]   ATP11AUN [ MEM ]
Gene Expression Viewer (FireBrowse)ATP11AUN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400165
GTEX Portal (Tissue expression)ATP11AUN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP68
Splice isoforms : SwissVarQ6ZP68
PhosPhoSitePlusQ6ZP68
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP11AUN
DMDM Disease mutations400165
Blocks (Seattle)ATP11AUN
SuperfamilyQ6ZP68
Human Protein AtlasENSG00000197595
Peptide AtlasQ6ZP68
HPRD16926
IPIIPI00401820   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP68
IntAct (EBI)Q6ZP68
FunCoupENSG00000197595
BioGRIDATP11AUN
STRING (EMBL)ATP11AUN
ZODIACATP11AUN
Ontologies - Pathways
QuickGOQ6ZP68
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkATP11AUN
Atlas of Cancer Signalling NetworkATP11AUN
Wikipedia pathwaysATP11AUN
Orthology - Evolution
OrthoDB400165
GeneTree (enSembl)ENSG00000197595
Phylogenetic Trees/Animal Genes : TreeFamATP11AUN
HOVERGENQ6ZP68
HOGENOMQ6ZP68
Homologs : HomoloGeneATP11AUN
Homology/Alignments : Family Browser (UCSC)ATP11AUN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP11AUN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP11AUN
dbVarATP11AUN
ClinVarATP11AUN
1000_GenomesATP11AUN 
Exome Variant ServerATP11AUN
ExAC (Exome Aggregation Consortium)ATP11AUN (select the gene name)
Genetic variants : HAPMAP400165
Genomic Variants (DGV)ATP11AUN [DGVbeta]
DECIPHERATP11AUN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP11AUN 
Mutations
ICGC Data PortalATP11AUN 
TCGA Data PortalATP11AUN 
Broad Tumor PortalATP11AUN
OASIS PortalATP11AUN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP11AUN
BioMutasearch ATP11AUN
DgiDB (Drug Gene Interaction Database)ATP11AUN
DoCM (Curated mutations)ATP11AUN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP11AUN (select a term)
intoGenATP11AUN
Cancer3DATP11AUN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP11AUN
Genetic Testing Registry ATP11AUN
NextProtQ6ZP68 [Medical]
TSGene400165
GENETestsATP11AUN
Target ValidationATP11AUN
Huge Navigator ATP11AUN [HugePedia]
snp3D : Map Gene to Disease400165
BioCentury BCIQATP11AUN
ClinGenATP11AUN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400165
Chemical/Pharm GKB GenePA162378074
Clinical trialATP11AUN
Miscellaneous
canSAR (ICR)ATP11AUN (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP11AUN
EVEXATP11AUN
GoPubMedATP11AUN
iHOPATP11AUN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:58 CEST 2017

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