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ATP11C (ATPase phospholipid transporting 11C)

Identity

Alias_namesATPase
Alias_symbol (synonym)ATPIG
ATPIQ
Other alias
HGNC (Hugo) ATP11C
LocusID (NCBI) 286410
Atlas_Id 52394
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 139726346 and ends at 139832288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP11C (Xq27.1) / ATP11C (Xq27.1)ATP11C (Xq27.1) / MALAT1 (11q13.1)ATP11C (Xq27.1) / PREX1 (20q13.13)
ATP11C (Xq27.1) / TMEM136 (11q23.3)TMEM136 (11q23.3) / ATP11C (Xq27.1)ATP11C Xq27.1 / PREX1 20q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP11C   13554
Cards
Entrez_Gene (NCBI)ATP11C  286410  ATPase phospholipid transporting 11C
AliasesATPIG; ATPIQ
GeneCards (Weizmann)ATP11C
Ensembl hg19 (Hinxton)ENSG00000101974 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101974 [Gene_View]  chrX:139726346-139832288 [Contig_View]  ATP11C [Vega]
ICGC DataPortalENSG00000101974
TCGA cBioPortalATP11C
AceView (NCBI)ATP11C
Genatlas (Paris)ATP11C
WikiGenes286410
SOURCE (Princeton)ATP11C
Genetics Home Reference (NIH)ATP11C
Genomic and cartography
GoldenPath hg38 (UCSC)ATP11C  -     chrX:139726346-139832288 -  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP11C  -     Xq27.1   [Description]    (hg19-Feb_2009)
EnsemblATP11C - Xq27.1 [CytoView hg19]  ATP11C - Xq27.1 [CytoView hg38]
Mapping of homologs : NCBIATP11C [Mapview hg19]  ATP11C [Mapview hg38]
OMIM300516   
Gene and transcription
Genbank (Entrez)AA829385 AJ580093 AJ580094 AK091552 AK093835
RefSeq transcript (Entrez)NM_001010986 NM_173694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP11C
Cluster EST : UnigeneHs.88252 [ NCBI ]
CGAP (NCI)Hs.88252
Alternative Splicing GalleryENSG00000101974
Gene ExpressionATP11C [ NCBI-GEO ]   ATP11C [ EBI - ARRAY_EXPRESS ]   ATP11C [ SEEK ]   ATP11C [ MEM ]
Gene Expression Viewer (FireBrowse)ATP11C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286410
GTEX Portal (Tissue expression)ATP11C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB49
Splice isoforms : SwissVarQ8NB49
Catalytic activity : Enzyme3.6.3.1 [ Enzyme-Expasy ]   3.6.3.13.6.3.1 [ IntEnz-EBI ]   3.6.3.1 [ BRENDA ]   3.6.3.1 [ KEGG ]   
PhosPhoSitePlusQ8NB49
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATP11C    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_ATPase_IV    P-type_ATPase_N    P_typ_ATPase    P_typ_ATPase_c   
Domain families : Pfam (Sanger)E1-E2_ATPase (PF00122)    PhoLip_ATPase_C (PF16212)    PhoLip_ATPase_N (PF16209)   
Domain families : Pfam (NCBI)pfam00122    pfam16212    pfam16209   
Conserved Domain (NCBI)ATP11C
DMDM Disease mutations286410
Blocks (Seattle)ATP11C
SuperfamilyQ8NB49
Human Protein AtlasENSG00000101974
Peptide AtlasQ8NB49
HPRD09814
IPIIPI00396234   IPI00237446   IPI00555989   IPI00552319   IPI01012900   IPI00646948   IPI01015754   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB49
IntAct (EBI)Q8NB49
FunCoupENSG00000101974
BioGRIDATP11C
STRING (EMBL)ATP11C
ZODIACATP11C
Ontologies - Pathways
QuickGOQ8NB49
Ontology : AmiGOmagnesium ion binding  pre-B cell differentiation  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  protein binding  ATP binding  lysosomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  plasma membrane  integral component of membrane  ion transmembrane transport  phospholipid translocation  positive regulation of B cell differentiation  recycling endosome  
Ontology : EGO-EBImagnesium ion binding  pre-B cell differentiation  phospholipid-translocating ATPase activity  phospholipid-translocating ATPase activity  protein binding  ATP binding  lysosomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  plasma membrane  integral component of membrane  ion transmembrane transport  phospholipid translocation  positive regulation of B cell differentiation  recycling endosome  
NDEx NetworkATP11C
Atlas of Cancer Signalling NetworkATP11C
Wikipedia pathwaysATP11C
Orthology - Evolution
OrthoDB286410
GeneTree (enSembl)ENSG00000101974
Phylogenetic Trees/Animal Genes : TreeFamATP11C
HOVERGENQ8NB49
HOGENOMQ8NB49
Homologs : HomoloGeneATP11C
Homology/Alignments : Family Browser (UCSC)ATP11C
Gene fusions - Rearrangements
Fusion : MitelmanATP11C/PREX1 [Xq27.1/20q13.13]  
Fusion: TCGAATP11C Xq27.1 PREX1 20q13.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP11C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP11C
dbVarATP11C
ClinVarATP11C
1000_GenomesATP11C 
Exome Variant ServerATP11C
ExAC (Exome Aggregation Consortium)ATP11C (select the gene name)
Genetic variants : HAPMAP286410
Genomic Variants (DGV)ATP11C [DGVbeta]
DECIPHERATP11C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP11C 
Mutations
ICGC Data PortalATP11C 
TCGA Data PortalATP11C 
Broad Tumor PortalATP11C
OASIS PortalATP11C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP11C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP11C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ATP11C
DgiDB (Drug Gene Interaction Database)ATP11C
DoCM (Curated mutations)ATP11C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP11C (select a term)
intoGenATP11C
Cancer3DATP11C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300516   
Orphanet
MedgenATP11C
Genetic Testing Registry ATP11C
NextProtQ8NB49 [Medical]
TSGene286410
GENETestsATP11C
Target ValidationATP11C
Huge Navigator ATP11C [HugePedia]
snp3D : Map Gene to Disease286410
BioCentury BCIQATP11C
ClinGenATP11C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286410
Chemical/Pharm GKB GenePA25103
Clinical trialATP11C
Miscellaneous
canSAR (ICR)ATP11C (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP11C
EVEXATP11C
GoPubMedATP11C
iHOPATP11C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:47:30 CEST 2017

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