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ATP12A (ATPase, H+/K+ transporting, nongastric, alpha polypeptide)

Identity

Other namesATP1AL1
HGNC (Hugo) ATP12A
LocusID (NCBI) 479
Location 13q12.12
Location_base_pair Starts at 25254549 and ends at 25285923 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATP12A   13816
Entrez_Gene (NCBI)ATP12A  479  ATPase, H+/K+ transporting, nongastric, alpha polypeptide
Cards
GeneCards (Weizmann)ATP12A
Ensembl (Hinxton)ENSG00000075673 [Gene_View]  chr13:25254549-25285923 [Contig_View]  ATP12A [Vega]
AceView (NCBI)ATP12A
Genatlas (Paris)ATP12A
SOURCE (Stanford)NM_001185085 NM_001676
Genomic and cartography
GoldenPath (UCSC)ATP12A  -  13q12.12   chr13:25254549-25285923 +  13q12.12   [Description]    (hg19-Feb_2009)
EnsemblATP12A - 13q12.12 [CytoView]
Mapping of homologs : NCBIATP12A [Mapview]
OMIM182360   
Gene and transcription
Genbank (Entrez)AK292968 AK303498 BC031609 CA450333 DB216724
RefSeq transcript (SRS)NM_001185085 NM_001676
RefSeq transcript (Entrez)NM_001185085 NM_001676
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838070 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838070 NW_004078077
Consensus coding sequences : CCDS (NCBI)ATP12A
Cluster EST : UnigeneHs.147111 [ SRS ] Hs.147111 [ NCBI ]
CGAP (NCI)Hs.147111
Alternative Splicing : Fast-db (Paris)GSHG0007994
Alternative Splicing GalleryENSG00000075673
Gene ExpressionATP12A [ NCBI-GEO ]   ATP12A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54707 (SRS) P54707 (Uniprot)
NextProtP54707
With graphics : InterProP54707
Splice isoforms : SwissVarP54707(Swissvar)
Domaine pattern : Prosite (SRS)ATPASE_E1_E2 (PS00154)   
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (SRS)ATPase_cation_domN    ATPase_P-typ_ATPase-assoc-dom    ATPase_P-typ_cation-ex_asu_euk    ATPase_P-typ_cation-exchng_asu    ATPase_P-typ_cation-transptr_C    ATPase_P-typ_cation-transptr_N    ATPase_P-typ_cyto_domA    ATPase_P-typ_cyto_domN    ATPase_P-typ_ion-transptr    ATPase_P-typ_P_site    ATPase_P-typ_TM_dom    Dehalogen-like_hydro    HAD-like_dom   
Domains : Interpro (EBI)ATPase_cation_domN    ATPase_P-typ_ATPase-assoc-dom    ATPase_P-typ_cation-ex_asu_euk    ATPase_P-typ_cation-exchng_asu    ATPase_P-typ_cation-transptr_C    ATPase_P-typ_cation-transptr_N    ATPase_P-typ_cyto_domA    ATPase_P-typ_cyto_domN    ATPase_P-typ_ion-transptr    ATPase_P-typ_P_site    ATPase_P-typ_TM_dom    Dehalogen-like_hydro    HAD-like_dom   
Related proteins : CluSTrP54707
Domain families : Pfam (SRS)Cation_ATPase_C (PF00689)    Cation_ATPase_N (PF00690)    E1-E2_ATPase (PF00122)    Hydrolase (PF00702)   
Domain families : Pfam (Sanger)Cation_ATPase_C (PF00689)    Cation_ATPase_N (PF00690)    E1-E2_ATPase (PF00122)    Hydrolase (PF00702)   
Domain families : Pfam (NCBI)pfam00689    pfam00690    pfam00122    pfam00702   
Domain families : Smart (EMBL)Cation_ATPase_N (SM00831)  
DMDM479
Blocks (Seattle)P54707
Human Protein AtlasENSG00000075673
HPRD01667
IPIIPI00872242   IPI00008161   
Protein Interaction databases
DIP (DOE-UCLA)P54707
IntAct (EBI)P54707
FunCoupENSG00000075673
REACTOMEATP12A
Protein Interaction Database479
BioGRIDATP12A
InParanoidP54707
Interologous Interaction database P54707
IntegromeDBATP12A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ATP12A
SNP (GeneSNP Utah)ATP12A
SNP : HGBaseATP12A
Genetic variants : HAPMAPATP12A
Somatic Mutations in Cancer : COSMICATP12A 
CONAN: Copy Number AnalysisATP12A 
Mutations and Diseases : HGMDATP12A
OMIM182360   
GENETests182360   
Disease Genetic AssociationATP12A
Huge Navigator ATP12A [HugePedia]  ATP12A [HugeCancerGEM]
Genomic VariantsATP12A  ATP12A [DGVbeta]
snp3D : Map Gene to Disease479
General knowledge
Homologs : HomoloGeneATP12A
Homology/Alignments : Family Browser (UCSC)ATP12A
Phylogenetic Trees/Animal Genes : TreeFamATP12A
Catalytic activity : Enzyme3.6.3.10 [ Enzyme-Expasy ]   3.6.3.10 [ Enzyme-SRS ]   3.6.3.10 [ IntEnz-EBI ]   3.6.3.10 [ BRENDA ]   3.6.3.10 [ KEGG ]   
Chemical/Protein Interactions : CTD479
Chemical/Pharm GKB GenePA25104
Clinical trialATP12A
Cancer Resource (Charite)ENSG00000075673
Ontology : AmiGOATP binding  plasma membrane  hydrogen:potassium-exchanging ATPase complex  ATP biosynthetic process  hydrogen:potassium-exchanging ATPase activity  response to metal ion  response to organic cyclic compound  apical plasma membrane  ion transmembrane transport  metal ion binding  potassium ion homeostasis  transmembrane transport  
Ontology : EGO-EBIATP binding  plasma membrane  hydrogen:potassium-exchanging ATPase complex  ATP biosynthetic process  hydrogen:potassium-exchanging ATPase activity  response to metal ion  response to organic cyclic compound  apical plasma membrane  ion transmembrane transport  metal ion binding  potassium ion homeostasis  transmembrane transport  
Pathways : KEGGOxidative phosphorylation
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneATP12A
iHOPATP12A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:54 CEST 2013
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