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ATP13A4 (ATPase type 13A4)

Identity

Alias_namesATPase type 13A4
Alias_symbol (synonym)DKFZp761I1011
FLJ37958
Other alias-
HGNC (Hugo) ATP13A4
LocusID (NCBI) 84239
Atlas_Id 60612
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 193116756 and ends at 193272911 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP13A4 (3q29) / NAALADL2 (3q26.31)OPA1 (3q29) / ATP13A4 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP13A4   25422
Cards
Entrez_Gene (NCBI)ATP13A4  84239  ATPase type 13A4
Aliases
GeneCards (Weizmann)ATP13A4
Ensembl hg19 (Hinxton) [Gene_View]  chr3:193116756-193272911 [Contig_View]  ATP13A4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:193116756-193272911 [Contig_View]  ATP13A4 [Vega]
TCGA cBioPortalATP13A4
AceView (NCBI)ATP13A4
Genatlas (Paris)ATP13A4
WikiGenes84239
SOURCE (Princeton)ATP13A4
Genetics Home Reference (NIH)ATP13A4
Genomic and cartography
GoldenPath hg19 (UCSC)ATP13A4  -     chr3:193116756-193272911 -  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATP13A4  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblATP13A4 - 3q29 [CytoView hg19]  ATP13A4 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIATP13A4 [Mapview hg19]  ATP13A4 [Mapview hg38]
OMIM609556   
Gene and transcription
Genbank (Entrez)AK095277 AK096510 AL512736 AY358110 AY823162
RefSeq transcript (Entrez)NM_032279
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ATP13A4
Cluster EST : UnigeneHs.674423 [ NCBI ]
CGAP (NCI)Hs.674423
Gene ExpressionATP13A4 [ NCBI-GEO ]   ATP13A4 [ EBI - ARRAY_EXPRESS ]   ATP13A4 [ SEEK ]   ATP13A4 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP13A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84239
GTEX Portal (Tissue expression)ATP13A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VNC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VNC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VNC1
Splice isoforms : SwissVarQ4VNC1
Catalytic activity : Enzyme3.6.3.- [ Enzyme-Expasy ]   3.6.3.-3.6.3.- [ IntEnz-EBI ]   3.6.3.- [ BRENDA ]   3.6.3.- [ KEGG ]   
PhosPhoSitePlusQ4VNC1
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATPase_P-typ_cation-transptr_N    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_TPase_V    P_typ_ATPase   
Domain families : Pfam (Sanger)Cation_ATPase_N (PF00690)    E1-E2_ATPase (PF00122)    P5-ATPase (PF12409)   
Domain families : Pfam (NCBI)pfam00690    pfam00122    pfam12409   
Domain families : Smart (EMBL)Cation_ATPase_N (SM00831)  
Conserved Domain (NCBI)ATP13A4
DMDM Disease mutations84239
Blocks (Seattle)ATP13A4
SuperfamilyQ4VNC1
Peptide AtlasQ4VNC1
HPRD12502
IPIIPI00166229   IPI00746808   IPI00795895   IPI00926518   IPI00795321   IPI00791950   IPI00927118   
Protein Interaction databases
DIP (DOE-UCLA)Q4VNC1
IntAct (EBI)Q4VNC1
BioGRIDATP13A4
STRING (EMBL)ATP13A4
ZODIACATP13A4
Ontologies - Pathways
QuickGOQ4VNC1
Ontology : AmiGOATP binding  endoplasmic reticulum membrane  plasma membrane  cation transport  cellular calcium ion homeostasis  metabolic process  integral component of membrane  ATPase activity  ion transmembrane transport  metal ion binding  transmembrane transport  
Ontology : EGO-EBIATP binding  endoplasmic reticulum membrane  plasma membrane  cation transport  cellular calcium ion homeostasis  metabolic process  integral component of membrane  ATPase activity  ion transmembrane transport  metal ion binding  transmembrane transport  
NDEx NetworkATP13A4
Atlas of Cancer Signalling NetworkATP13A4
Wikipedia pathwaysATP13A4
Orthology - Evolution
OrthoDB84239
Phylogenetic Trees/Animal Genes : TreeFamATP13A4
HOVERGENQ4VNC1
HOGENOMQ4VNC1
Homologs : HomoloGeneATP13A4
Homology/Alignments : Family Browser (UCSC)ATP13A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP13A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP13A4
dbVarATP13A4
ClinVarATP13A4
1000_GenomesATP13A4 
Exome Variant ServerATP13A4
ExAC (Exome Aggregation Consortium)ATP13A4 (select the gene name)
Genetic variants : HAPMAP84239
Genomic Variants (DGV)ATP13A4 [DGVbeta]
DECIPHER (Syndromes)3:193116756-193272911  
CONAN: Copy Number AnalysisATP13A4 
Mutations
ICGC Data PortalATP13A4 
TCGA Data PortalATP13A4 
Broad Tumor PortalATP13A4
OASIS PortalATP13A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP13A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP13A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP13A4
DgiDB (Drug Gene Interaction Database)ATP13A4
DoCM (Curated mutations)ATP13A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP13A4 (select a term)
intoGenATP13A4
Cancer3DATP13A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609556   
Orphanet
MedgenATP13A4
Genetic Testing Registry ATP13A4
NextProtQ4VNC1 [Medical]
TSGene84239
GENETestsATP13A4
Huge Navigator ATP13A4 [HugePedia]
snp3D : Map Gene to Disease84239
BioCentury BCIQATP13A4
ClinGenATP13A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84239
Chemical/Pharm GKB GenePA134979581
Clinical trialATP13A4
Miscellaneous
canSAR (ICR)ATP13A4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP13A4
EVEXATP13A4
GoPubMedATP13A4
iHOPATP13A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:20 CET 2017

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