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ATP13A5 (ATPase 13A5)

Identity

Alias_namesATPase type 13A5
Alias_symbol (synonym)FLJ16025
Other alias-
HGNC (Hugo) ATP13A5
LocusID (NCBI) 344905
Atlas_Id 60614
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 193275042 and ends at 193378725 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP13A5   31789
Cards
Entrez_Gene (NCBI)ATP13A5  344905  ATPase 13A5
Aliases
GeneCards (Weizmann)ATP13A5
Ensembl hg19 (Hinxton)ENSG00000187527 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187527 [Gene_View]  chr3:193275042-193378725 [Contig_View]  ATP13A5 [Vega]
ICGC DataPortalENSG00000187527
TCGA cBioPortalATP13A5
AceView (NCBI)ATP13A5
Genatlas (Paris)ATP13A5
WikiGenes344905
SOURCE (Princeton)ATP13A5
Genetics Home Reference (NIH)ATP13A5
Genomic and cartography
GoldenPath hg38 (UCSC)ATP13A5  -     chr3:193275042-193378725 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP13A5  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblATP13A5 - 3q29 [CytoView hg19]  ATP13A5 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIATP13A5 [Mapview hg19]  ATP13A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122613 AY358667 AY823163 BC033334 BC156652
RefSeq transcript (Entrez)NM_198505
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP13A5
Cluster EST : UnigeneHs.658032 [ NCBI ]
CGAP (NCI)Hs.658032
Alternative Splicing GalleryENSG00000187527
Gene ExpressionATP13A5 [ NCBI-GEO ]   ATP13A5 [ EBI - ARRAY_EXPRESS ]   ATP13A5 [ SEEK ]   ATP13A5 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP13A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344905
GTEX Portal (Tissue expression)ATP13A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VNC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VNC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VNC0
Splice isoforms : SwissVarQ4VNC0
Catalytic activity : Enzyme3.6.3.- [ Enzyme-Expasy ]   3.6.3.-3.6.3.- [ IntEnz-EBI ]   3.6.3.- [ BRENDA ]   3.6.3.- [ KEGG ]   
PhosPhoSitePlusQ4VNC0
Domaine pattern : Prosite (Expaxy)ATPASE_E1_E2 (PS00154)   
Domains : Interpro (EBI)ATPase_P-typ_cation-transptr_N    ATPase_P-typ_cyto_domN    ATPase_P-typ_P_site    ATPase_P-typ_transduc_dom_A    HAD-like_dom    P-type_TPase_V    P_typ_ATPase   
Domain families : Pfam (Sanger)Cation_ATPase_N (PF00690)    E1-E2_ATPase (PF00122)    P5-ATPase (PF12409)   
Domain families : Pfam (NCBI)pfam00690    pfam00122    pfam12409   
Conserved Domain (NCBI)ATP13A5
DMDM Disease mutations344905
Blocks (Seattle)ATP13A5
SuperfamilyQ4VNC0
Human Protein AtlasENSG00000187527
Peptide AtlasQ4VNC0
HPRD18597
IPIIPI00607633   IPI00926208   
Protein Interaction databases
DIP (DOE-UCLA)Q4VNC0
IntAct (EBI)Q4VNC0
FunCoupENSG00000187527
BioGRIDATP13A5
STRING (EMBL)ATP13A5
ZODIACATP13A5
Ontologies - Pathways
QuickGOQ4VNC0
Ontology : AmiGOcalcium-transporting ATPase activity  ATP binding  plasma membrane  integral component of plasma membrane  cellular calcium ion homeostasis  cation-transporting ATPase activity  ion transmembrane transport  intracellular membrane-bounded organelle  metal ion binding  calcium ion transmembrane transport  ATP hydrolysis coupled cation transmembrane transport  
Ontology : EGO-EBIcalcium-transporting ATPase activity  ATP binding  plasma membrane  integral component of plasma membrane  cellular calcium ion homeostasis  cation-transporting ATPase activity  ion transmembrane transport  intracellular membrane-bounded organelle  metal ion binding  calcium ion transmembrane transport  ATP hydrolysis coupled cation transmembrane transport  
NDEx NetworkATP13A5
Atlas of Cancer Signalling NetworkATP13A5
Wikipedia pathwaysATP13A5
Orthology - Evolution
OrthoDB344905
GeneTree (enSembl)ENSG00000187527
Phylogenetic Trees/Animal Genes : TreeFamATP13A5
HOVERGENQ4VNC0
HOGENOMQ4VNC0
Homologs : HomoloGeneATP13A5
Homology/Alignments : Family Browser (UCSC)ATP13A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP13A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP13A5
dbVarATP13A5
ClinVarATP13A5
1000_GenomesATP13A5 
Exome Variant ServerATP13A5
ExAC (Exome Aggregation Consortium)ATP13A5 (select the gene name)
Genetic variants : HAPMAP344905
Genomic Variants (DGV)ATP13A5 [DGVbeta]
DECIPHERATP13A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP13A5 
Mutations
ICGC Data PortalATP13A5 
TCGA Data PortalATP13A5 
Broad Tumor PortalATP13A5
OASIS PortalATP13A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP13A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP13A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP13A5
DgiDB (Drug Gene Interaction Database)ATP13A5
DoCM (Curated mutations)ATP13A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP13A5 (select a term)
intoGenATP13A5
Cancer3DATP13A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP13A5
Genetic Testing Registry ATP13A5
NextProtQ4VNC0 [Medical]
TSGene344905
GENETestsATP13A5
Target ValidationATP13A5
Huge Navigator ATP13A5 [HugePedia]
snp3D : Map Gene to Disease344905
BioCentury BCIQATP13A5
ClinGenATP13A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344905
Chemical/Pharm GKB GenePA134952038
Clinical trialATP13A5
Miscellaneous
canSAR (ICR)ATP13A5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP13A5
EVEXATP13A5
GoPubMedATP13A5
iHOPATP13A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:59 CEST 2017

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