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ATP1A1-AS1 (ATP1A1 antisense RNA 1)

Identity

Alias_namesC1orf203
ATP1A1OS
chromosome 1 open reading frame 203
ATP1A1 opposite strand
Alias_symbol (synonym)MGC16179
Other alias
HGNC (Hugo) ATP1A1-AS1
LocusID (NCBI) 84852
Atlas_Id 60616
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 116935057 and ends at 116961244 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP1A1-AS1   28262
Cards
Entrez_Gene (NCBI)ATP1A1-AS1  84852  ATP1A1 antisense RNA 1
AliasesATP1A1OS; C1orf203
GeneCards (Weizmann)ATP1A1-AS1
Ensembl hg19 (Hinxton)ENSG00000203865 [Gene_View]  chr1:116935057-116961244 [Contig_View]  ATP1A1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203865 [Gene_View]  chr1:116935057-116961244 [Contig_View]  ATP1A1-AS1 [Vega]
ICGC DataPortalENSG00000203865
TCGA cBioPortalATP1A1-AS1
AceView (NCBI)ATP1A1-AS1
Genatlas (Paris)ATP1A1-AS1
WikiGenes84852
SOURCE (Princeton)ATP1A1-AS1
Genetics Home Reference (NIH)ATP1A1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)ATP1A1-AS1  -     chr1:116935057-116961244 -  1p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATP1A1-AS1  -     1p13.1   [Description]    (hg38-Dec_2013)
EnsemblATP1A1-AS1 - 1p13.1 [CytoView hg19]  ATP1A1-AS1 - 1p13.1 [CytoView hg38]
Mapping of homologs : NCBIATP1A1-AS1 [Mapview hg19]  ATP1A1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK309389 AK309872 BC007373 BC018892 BC028281
RefSeq transcript (Entrez)NM_032766
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ATP1A1-AS1
Cluster EST : UnigeneHs.664752 [ NCBI ]
CGAP (NCI)Hs.664752
Alternative Splicing GalleryENSG00000203865
Gene ExpressionATP1A1-AS1 [ NCBI-GEO ]   ATP1A1-AS1 [ EBI - ARRAY_EXPRESS ]   ATP1A1-AS1 [ SEEK ]   ATP1A1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP1A1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84852
GTEX Portal (Tissue expression)ATP1A1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TC04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TC04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TC04
Splice isoforms : SwissVarQ5TC04
PhosPhoSitePlusQ5TC04
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP1A1-AS1
DMDM Disease mutations84852
Blocks (Seattle)ATP1A1-AS1
SuperfamilyQ5TC04
Human Protein AtlasENSG00000203865
Peptide AtlasQ5TC04
IPIIPI00513924   
Protein Interaction databases
DIP (DOE-UCLA)Q5TC04
IntAct (EBI)Q5TC04
FunCoupENSG00000203865
BioGRIDATP1A1-AS1
STRING (EMBL)ATP1A1-AS1
ZODIACATP1A1-AS1
Ontologies - Pathways
QuickGOQ5TC04
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkATP1A1-AS1
Atlas of Cancer Signalling NetworkATP1A1-AS1
Wikipedia pathwaysATP1A1-AS1
Orthology - Evolution
OrthoDB84852
GeneTree (enSembl)ENSG00000203865
Phylogenetic Trees/Animal Genes : TreeFamATP1A1-AS1
HOVERGENQ5TC04
HOGENOMQ5TC04
Homologs : HomoloGeneATP1A1-AS1
Homology/Alignments : Family Browser (UCSC)ATP1A1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP1A1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP1A1-AS1
dbVarATP1A1-AS1
ClinVarATP1A1-AS1
1000_GenomesATP1A1-AS1 
Exome Variant ServerATP1A1-AS1
ExAC (Exome Aggregation Consortium)ATP1A1-AS1 (select the gene name)
Genetic variants : HAPMAP84852
Genomic Variants (DGV)ATP1A1-AS1 [DGVbeta]
DECIPHER (Syndromes)1:116935057-116961244  ENSG00000203865
CONAN: Copy Number AnalysisATP1A1-AS1 
Mutations
ICGC Data PortalATP1A1-AS1 
TCGA Data PortalATP1A1-AS1 
Broad Tumor PortalATP1A1-AS1
OASIS PortalATP1A1-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP1A1-AS1
BioMutasearch ATP1A1-AS1
DgiDB (Drug Gene Interaction Database)ATP1A1-AS1
DoCM (Curated mutations)ATP1A1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP1A1-AS1 (select a term)
intoGenATP1A1-AS1
Cancer3DATP1A1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP1A1-AS1
Genetic Testing Registry ATP1A1-AS1
NextProtQ5TC04 [Medical]
TSGene84852
GENETestsATP1A1-AS1
Huge Navigator ATP1A1-AS1 [HugePedia]
snp3D : Map Gene to Disease84852
BioCentury BCIQATP1A1-AS1
ClinGenATP1A1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84852
Chemical/Pharm GKB GenePA165750414
Clinical trialATP1A1-AS1
Miscellaneous
canSAR (ICR)ATP1A1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP1A1-AS1
EVEXATP1A1-AS1
GoPubMedATP1A1-AS1
iHOPATP1A1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:21 CET 2017

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