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ATP1B4 (ATPase Na+/K+ transporting family member beta 4)

Identity

Alias_namesATPase, (Na)/K transporting, beta 4 polypeptide
ATPase, Na?? transporting, beta 4 polypeptide
Other alias-
HGNC (Hugo) ATP1B4
LocusID (NCBI) 23439
Atlas_Id 54140
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 119495940 and ends at 119517104 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST11 (12q23.3) / ATP1B4 (Xq24)CHST11 12q23.3 / ATP1B4 Xq24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP1B4   808
Cards
Entrez_Gene (NCBI)ATP1B4  23439  ATPase Na+/K+ transporting family member beta 4
Aliases
GeneCards (Weizmann)ATP1B4
Ensembl hg19 (Hinxton)ENSG00000101892 [Gene_View]  chrX:119495940-119517104 [Contig_View]  ATP1B4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101892 [Gene_View]  chrX:119495940-119517104 [Contig_View]  ATP1B4 [Vega]
ICGC DataPortalENSG00000101892
TCGA cBioPortalATP1B4
AceView (NCBI)ATP1B4
Genatlas (Paris)ATP1B4
WikiGenes23439
SOURCE (Princeton)ATP1B4
Genetics Home Reference (NIH)ATP1B4
Genomic and cartography
GoldenPath hg19 (UCSC)ATP1B4  -     chrX:119495940-119517104 +  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ATP1B4  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblATP1B4 - Xq24 [CytoView hg19]  ATP1B4 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIATP1B4 [Mapview hg19]  ATP1B4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA436959 AF158383 AF158384 AK309999 BC117227
RefSeq transcript (Entrez)NM_001142447 NM_012069
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016773 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)ATP1B4
Cluster EST : UnigeneHs.292599 [ NCBI ]
CGAP (NCI)Hs.292599
Alternative Splicing GalleryENSG00000101892
Gene ExpressionATP1B4 [ NCBI-GEO ]   ATP1B4 [ EBI - ARRAY_EXPRESS ]   ATP1B4 [ SEEK ]   ATP1B4 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP1B4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23439
GTEX Portal (Tissue expression)ATP1B4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN42
Splice isoforms : SwissVarQ9UN42
PhosPhoSitePlusQ9UN42
Domaine pattern : Prosite (Expaxy)ATPASE_NA_K_BETA_1 (PS00390)    ATPASE_NA_K_BETA_2 (PS00391)   
Domains : Interpro (EBI)Na/K_ATPase_sub_beta   
Domain families : Pfam (Sanger)Na_K-ATPase (PF00287)   
Domain families : Pfam (NCBI)pfam00287   
Conserved Domain (NCBI)ATP1B4
DMDM Disease mutations23439
Blocks (Seattle)ATP1B4
SuperfamilyQ9UN42
Human Protein AtlasENSG00000101892
Peptide AtlasQ9UN42
HPRD06453
IPIIPI00013724   IPI00220387   IPI00922690   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN42
IntAct (EBI)Q9UN42
FunCoupENSG00000101892
BioGRIDATP1B4
STRING (EMBL)ATP1B4
ZODIACATP1B4
Ontologies - Pathways
QuickGOQ9UN42
Ontology : AmiGOchromatin  nuclear envelope  nuclear inner membrane  integral component of plasma membrane  sodium:potassium-exchanging ATPase complex  transcription, DNA-templated  regulation of transcription, DNA-templated  transport  monovalent inorganic cation transmembrane transporter activity  monovalent inorganic cation transport  monovalent inorganic cation transport  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIchromatin  nuclear envelope  nuclear inner membrane  integral component of plasma membrane  sodium:potassium-exchanging ATPase complex  transcription, DNA-templated  regulation of transcription, DNA-templated  transport  monovalent inorganic cation transmembrane transporter activity  monovalent inorganic cation transport  monovalent inorganic cation transport  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGCardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Insulin secretion    Thyroid hormone synthesis    Thyroid hormone signaling pathway    Aldosterone-regulated sodium reabsorption    Endocrine and other factor-regulated calcium reabsorption    Proximal tubule bicarbonate reclamation    Salivary secretion    Gastric acid secretion    Pancreatic secretion    Carbohydrate digestion and absorption    Protein digestion and absorption    Bile secretion    Mineral absorption   
NDEx NetworkATP1B4
Atlas of Cancer Signalling NetworkATP1B4
Wikipedia pathwaysATP1B4
Orthology - Evolution
OrthoDB23439
GeneTree (enSembl)ENSG00000101892
Phylogenetic Trees/Animal Genes : TreeFamATP1B4
HOVERGENQ9UN42
HOGENOMQ9UN42
Homologs : HomoloGeneATP1B4
Homology/Alignments : Family Browser (UCSC)ATP1B4
Gene fusions - Rearrangements
Fusion : MitelmanCHST11/ATP1B4 [12q23.3/Xq24]  [t(X;12)(q24;q23)]  
Fusion: TCGACHST11 12q23.3 ATP1B4 Xq24 LAML
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP1B4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP1B4
dbVarATP1B4
ClinVarATP1B4
1000_GenomesATP1B4 
Exome Variant ServerATP1B4
ExAC (Exome Aggregation Consortium)ATP1B4 (select the gene name)
Genetic variants : HAPMAP23439
Genomic Variants (DGV)ATP1B4 [DGVbeta]
DECIPHER (Syndromes)X:119495940-119517104  ENSG00000101892
CONAN: Copy Number AnalysisATP1B4 
Mutations
ICGC Data PortalATP1B4 
TCGA Data PortalATP1B4 
Broad Tumor PortalATP1B4
OASIS PortalATP1B4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP1B4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP1B4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ATP1B4
DgiDB (Drug Gene Interaction Database)ATP1B4
DoCM (Curated mutations)ATP1B4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP1B4 (select a term)
intoGenATP1B4
Cancer3DATP1B4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP1B4
Genetic Testing Registry ATP1B4
NextProtQ9UN42 [Medical]
TSGene23439
GENETestsATP1B4
Huge Navigator ATP1B4 [HugePedia]
snp3D : Map Gene to Disease23439
BioCentury BCIQATP1B4
ClinGenATP1B4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23439
Chemical/Pharm GKB GenePA410
Clinical trialATP1B4
Miscellaneous
canSAR (ICR)ATP1B4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP1B4
EVEXATP1B4
GoPubMedATP1B4
iHOPATP1B4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:56:56 CET 2017

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