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ATP23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog)

Identity

Alias_namesXRCC6BP1
XRCC6 binding protein 1
ATP23 metallopeptidase and ATP synthase assembly factor homolog (S. cerevisiae)
Alias_symbol (synonym)KUB3
Other alias
HGNC (Hugo) ATP23
LocusID (NCBI) 91419
Atlas_Id 55647
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 57941504 and ends at 57957269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP23   29452
Cards
Entrez_Gene (NCBI)ATP23  91419  ATP23 metallopeptidase and ATP synthase assembly factor homolog
AliasesKUB3; XRCC6BP1
GeneCards (Weizmann)ATP23
Ensembl hg19 (Hinxton)ENSG00000166896 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166896 [Gene_View]  ENSG00000166896 [Sequence]  chr12:57941504-57957269 [Contig_View]  ATP23 [Vega]
ICGC DataPortalENSG00000166896
TCGA cBioPortalATP23
AceView (NCBI)ATP23
Genatlas (Paris)ATP23
WikiGenes91419
SOURCE (Princeton)ATP23
Genetics Home Reference (NIH)ATP23
Genomic and cartography
GoldenPath hg38 (UCSC)ATP23  -     chr12:57941504-57957269 +  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP23  -     12q14.1   [Description]    (hg19-Feb_2009)
EnsemblATP23 - 12q14.1 [CytoView hg19]  ATP23 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBIATP23 [Mapview hg19]  ATP23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF078164 BC012776 BC033881 BC115381 BC115382
RefSeq transcript (Entrez)NM_001320408 NM_001320409 NM_001320410 NM_033276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP23
Cluster EST : UnigeneHs.61188 [ NCBI ]
CGAP (NCI)Hs.61188
Alternative Splicing GalleryENSG00000166896
Gene ExpressionATP23 [ NCBI-GEO ]   ATP23 [ EBI - ARRAY_EXPRESS ]   ATP23 [ SEEK ]   ATP23 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91419
GTEX Portal (Tissue expression)ATP23
Human Protein AtlasENSG00000166896-ATP23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6H3
Splice isoforms : SwissVarQ9Y6H3
Catalytic activity : Enzyme3.4.24.- [ Enzyme-Expasy ]   3.4.24.-3.4.24.- [ IntEnz-EBI ]   3.4.24.- [ BRENDA ]   3.4.24.- [ KEGG ]   
PhosPhoSitePlusQ9Y6H3
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)Peptidase_M76_ATP23   
Domain families : Pfam (Sanger)Peptidase_M76 (PF09768)   
Domain families : Pfam (NCBI)pfam09768   
Conserved Domain (NCBI)ATP23
DMDM Disease mutations91419
Blocks (Seattle)ATP23
SuperfamilyQ9Y6H3
Human Protein Atlas [tissue]ENSG00000166896-ATP23 [tissue]
Peptide AtlasQ9Y6H3
HPRD17256
IPIIPI00002288   IPI01021033   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6H3
IntAct (EBI)Q9Y6H3
FunCoupENSG00000166896
BioGRIDATP23
STRING (EMBL)ATP23
ZODIACATP23
Ontologies - Pathways
QuickGOQ9Y6H3
Ontology : AmiGOmetalloendopeptidase activity  DNA-dependent protein kinase activity  cytosol  plasma membrane  DNA-dependent protein kinase-DNA ligase 4 complex  double-strand break repair via nonhomologous end joining  protein phosphorylation  proteolysis  cell junction  intracellular membrane-bounded organelle  metal ion binding  
Ontology : EGO-EBImetalloendopeptidase activity  DNA-dependent protein kinase activity  cytosol  plasma membrane  DNA-dependent protein kinase-DNA ligase 4 complex  double-strand break repair via nonhomologous end joining  protein phosphorylation  proteolysis  cell junction  intracellular membrane-bounded organelle  metal ion binding  
NDEx NetworkATP23
Atlas of Cancer Signalling NetworkATP23
Wikipedia pathwaysATP23
Orthology - Evolution
OrthoDB91419
GeneTree (enSembl)ENSG00000166896
Phylogenetic Trees/Animal Genes : TreeFamATP23
HOVERGENQ9Y6H3
HOGENOMQ9Y6H3
Homologs : HomoloGeneATP23
Homology/Alignments : Family Browser (UCSC)ATP23
Gene fusions - Rearrangements
Fusion : QuiverATP23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP23
dbVarATP23
ClinVarATP23
1000_GenomesATP23 
Exome Variant ServerATP23
ExAC (Exome Aggregation Consortium)ENSG00000166896
GNOMAD BrowserENSG00000166896
Varsome BrowserATP23
Genetic variants : HAPMAP91419
Genomic Variants (DGV)ATP23 [DGVbeta]
DECIPHERATP23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP23 
Mutations
ICGC Data PortalATP23 
TCGA Data PortalATP23 
Broad Tumor PortalATP23
OASIS PortalATP23 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP23
BioMutasearch ATP23
DgiDB (Drug Gene Interaction Database)ATP23
DoCM (Curated mutations)ATP23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP23 (select a term)
intoGenATP23
Cancer3DATP23(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETATP23
MedgenATP23
Genetic Testing Registry ATP23
NextProtQ9Y6H3 [Medical]
TSGene91419
GENETestsATP23
Target ValidationATP23
Huge Navigator ATP23 [HugePedia]
snp3D : Map Gene to Disease91419
BioCentury BCIQATP23
ClinGenATP23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91419
Chemical/Pharm GKB GenePA142670557
Clinical trialATP23
Miscellaneous
canSAR (ICR)ATP23 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP23
EVEXATP23
GoPubMedATP23
iHOPATP23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:10:38 CEST 2018

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