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ATP2A1-AS1 (ATP2A1 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) ATP2A1-AS1
LocusID (NCBI) 100289092
Atlas_Id 60618
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28878957 and ends at 28879921 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP2A1-AS1   51370
Cards
Entrez_Gene (NCBI)ATP2A1-AS1  100289092  ATP2A1 antisense RNA 1
Aliases
GeneCards (Weizmann)ATP2A1-AS1
Ensembl hg19 (Hinxton)ENSG00000260442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260442 [Gene_View]  chr16:28878957-28879921 [Contig_View]  ATP2A1-AS1 [Vega]
ICGC DataPortalENSG00000260442
TCGA cBioPortalATP2A1-AS1
AceView (NCBI)ATP2A1-AS1
Genatlas (Paris)ATP2A1-AS1
WikiGenes100289092
SOURCE (Princeton)ATP2A1-AS1
Genetics Home Reference (NIH)ATP2A1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP2A1-AS1  -     chr16:28878957-28879921 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP2A1-AS1  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblATP2A1-AS1 - 16p11.2 [CytoView hg19]  ATP2A1-AS1 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIATP2A1-AS1 [Mapview hg19]  ATP2A1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI015924 AI825432 AW451408 BX099641 CK823011
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP2A1-AS1
Cluster EST : UnigeneHs.666631 [ NCBI ]
CGAP (NCI)Hs.666631
Alternative Splicing GalleryENSG00000260442
Gene ExpressionATP2A1-AS1 [ NCBI-GEO ]   ATP2A1-AS1 [ EBI - ARRAY_EXPRESS ]   ATP2A1-AS1 [ SEEK ]   ATP2A1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP2A1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100289092
GTEX Portal (Tissue expression)ATP2A1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP2A1-AS1
DMDM Disease mutations100289092
Blocks (Seattle)ATP2A1-AS1
Human Protein AtlasENSG00000260442
Protein Interaction databases
FunCoupENSG00000260442
BioGRIDATP2A1-AS1
STRING (EMBL)ATP2A1-AS1
ZODIACATP2A1-AS1
Ontologies - Pathways
Huge Navigator ATP2A1-AS1 [HugePedia]
snp3D : Map Gene to Disease100289092
BioCentury BCIQATP2A1-AS1
ClinGenATP2A1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289092
Clinical trialATP2A1-AS1
Miscellaneous
canSAR (ICR)ATP2A1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP2A1-AS1
EVEXATP2A1-AS1
GoPubMedATP2A1-AS1
iHOPATP2A1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:10 CEST 2017

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