Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATP2B1-AS1 (ATP2B1 antisense RNA 1)


Alias (NCBI)LINC00936
HGNC (Hugo) ATP2B1-AS1
HGNC Previous nameLINC00936
HGNC Previous namelong intergenic non-protein coding RNA 936
LocusID (NCBI) 338758
Atlas_Id 79021
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 89708955 and ends at 89711952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)ATP2B1-AS1   27883
Entrez_Gene (NCBI)ATP2B1-AS1    ATP2B1 antisense RNA 1
GeneCards (Weizmann)ATP2B1-AS1
Ensembl hg19 (Hinxton)ENSG00000271614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271614 [Gene_View]  ENSG00000271614 [Sequence]  chr12:89708955-89711952 [Contig_View]  ATP2B1-AS1 [Vega]
ICGC DataPortalENSG00000271614
TCGA cBioPortalATP2B1-AS1
AceView (NCBI)ATP2B1-AS1
Genatlas (Paris)ATP2B1-AS1
SOURCE (Princeton)ATP2B1-AS1
Genetics Home Reference (NIH)ATP2B1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP2B1-AS1  -     chr12:89708955-89711952 +  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP2B1-AS1  -     12q21.33   [Description]    (hg19-Feb_2009)
GoldenPathATP2B1-AS1 - 12q21.33 [CytoView hg19]  ATP2B1-AS1 - 12q21.33 [CytoView hg38]
genome Data Viewer NCBIATP2B1-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK094517 BC031240 BC040326 BC047477
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP2B1-AS1
Alternative Splicing GalleryENSG00000271614
Gene ExpressionATP2B1-AS1 [ NCBI-GEO ]   ATP2B1-AS1 [ EBI - ARRAY_EXPRESS ]   ATP2B1-AS1 [ SEEK ]   ATP2B1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP2B1-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of ATP2B1-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338758
GTEX Portal (Tissue expression)ATP2B1-AS1
Human Protein AtlasENSG00000271614-ATP2B1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP2B1-AS1
Blocks (Seattle)ATP2B1-AS1
Human Protein Atlas [tissue]ENSG00000271614-ATP2B1-AS1 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:46:36 CET 2020

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