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ATP2B1-AS1 (ATP2B1 antisense RNA 1)

Identity

Alias_namesLINC00936
long intergenic non-protein coding RNA 936
Other alias
HGNC (Hugo) ATP2B1-AS1
LocusID (NCBI) 338758
Atlas_Id 79021
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 89708955 and ends at 89711952 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP2B1-AS1   27883
Cards
Entrez_Gene (NCBI)ATP2B1-AS1  338758  ATP2B1 antisense RNA 1
AliasesLINC00936
GeneCards (Weizmann)ATP2B1-AS1
Ensembl hg19 (Hinxton)ENSG00000271614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271614 [Gene_View]  chr12:89708955-89711952 [Contig_View]  ATP2B1-AS1 [Vega]
ICGC DataPortalENSG00000271614
TCGA cBioPortalATP2B1-AS1
AceView (NCBI)ATP2B1-AS1
Genatlas (Paris)ATP2B1-AS1
WikiGenes338758
SOURCE (Princeton)ATP2B1-AS1
Genetics Home Reference (NIH)ATP2B1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP2B1-AS1  -     chr12:89708955-89711952 +  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP2B1-AS1  -     12q21.33   [Description]    (hg19-Feb_2009)
EnsemblATP2B1-AS1 - 12q21.33 [CytoView hg19]  ATP2B1-AS1 - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBIATP2B1-AS1 [Mapview hg19]  ATP2B1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094517 BC031240 BC040326 BC047477
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP2B1-AS1
Cluster EST : UnigeneHs.601766 [ NCBI ]
CGAP (NCI)Hs.601766
Alternative Splicing GalleryENSG00000271614
Gene ExpressionATP2B1-AS1 [ NCBI-GEO ]   ATP2B1-AS1 [ EBI - ARRAY_EXPRESS ]   ATP2B1-AS1 [ SEEK ]   ATP2B1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP2B1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)338758
GTEX Portal (Tissue expression)ATP2B1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP2B1-AS1
DMDM Disease mutations338758
Blocks (Seattle)ATP2B1-AS1
Human Protein AtlasENSG00000271614
IPIIPI00748399   
Protein Interaction databases
FunCoupENSG00000271614
BioGRIDATP2B1-AS1
STRING (EMBL)ATP2B1-AS1
ZODIACATP2B1-AS1
Ontologies - Pathways
Huge Navigator ATP2B1-AS1 [HugePedia]
snp3D : Map Gene to Disease338758
BioCentury BCIQATP2B1-AS1
ClinGenATP2B1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338758
Clinical trialATP2B1-AS1
Miscellaneous
canSAR (ICR)ATP2B1-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP2B1-AS1
EVEXATP2B1-AS1
GoPubMedATP2B1-AS1
iHOPATP2B1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:00 CEST 2017

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