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ATP2B2-IT2 (ATP2B2 intronic transcript 2)

Identity

Alias_namesATP2B2 intronic transcript 2 (non-protein coding)
Other alias-
HGNC (Hugo) ATP2B2-IT2
LocusID (NCBI) 100874325
Atlas_Id 60619
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 10626016 and ends at 10626807 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP2B2-IT2   41310
Cards
Entrez_Gene (NCBI)ATP2B2-IT2  100874325  ATP2B2 intronic transcript 2
Aliases
GeneCards (Weizmann)ATP2B2-IT2
Ensembl hg19 (Hinxton)ENSG00000224771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224771 [Gene_View]  chr3:10626016-10626807 [Contig_View]  ATP2B2-IT2 [Vega]
ICGC DataPortalENSG00000224771
TCGA cBioPortalATP2B2-IT2
AceView (NCBI)ATP2B2-IT2
Genatlas (Paris)ATP2B2-IT2
WikiGenes100874325
SOURCE (Princeton)ATP2B2-IT2
Genetics Home Reference (NIH)ATP2B2-IT2
Genomic and cartography
GoldenPath hg38 (UCSC)ATP2B2-IT2  -     chr3:10626016-10626807 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP2B2-IT2  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblATP2B2-IT2 - 3p25.3 [CytoView hg19]  ATP2B2-IT2 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIATP2B2-IT2 [Mapview hg19]  ATP2B2-IT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI126440 BX110985
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP2B2-IT2
Cluster EST : UnigeneHs.143004 [ NCBI ]
CGAP (NCI)Hs.143004
Alternative Splicing GalleryENSG00000224771
Gene ExpressionATP2B2-IT2 [ NCBI-GEO ]   ATP2B2-IT2 [ EBI - ARRAY_EXPRESS ]   ATP2B2-IT2 [ SEEK ]   ATP2B2-IT2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP2B2-IT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874325
GTEX Portal (Tissue expression)ATP2B2-IT2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP2B2-IT2
DMDM Disease mutations100874325
Blocks (Seattle)ATP2B2-IT2
Human Protein AtlasENSG00000224771
Protein Interaction databases
FunCoupENSG00000224771
BioGRIDATP2B2-IT2
STRING (EMBL)ATP2B2-IT2
ZODIACATP2B2-IT2
Ontologies - Pathways
Huge Navigator ATP2B2-IT2 [HugePedia]
snp3D : Map Gene to Disease100874325
BioCentury BCIQATP2B2-IT2
ClinGenATP2B2-IT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874325
Clinical trialATP2B2-IT2
Miscellaneous
canSAR (ICR)ATP2B2-IT2 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP2B2-IT2
EVEXATP2B2-IT2
GoPubMedATP2B2-IT2
iHOPATP2B2-IT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:10 CEST 2017

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