Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATP2C1 (ATPase secretory pathway Ca2+ transporting 1)

Identity

Alias (NCBI)ATP2C1A
BCPM
HHD
PMR1
SPCA1
hSPCA1
HGNC (Hugo) ATP2C1
HGNC Alias symbKIAA1347
ATP2C1A
PMR1
SPCA1
HGNC Alias namesecretory pathway Ca2+/Mn2+ ATPase 1
 calcium-transporting ATPase type 2C member 1
HGNC Previous nameBCPM
HGNC Previous namebenign chronic pemphigus (Hailey-Hailey disease)
 ATPase, Ca++ transporting, type 2C, member 1
LocusID (NCBI) 27032
Atlas_Id 57232
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 130894550 and ends at 131003202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP2C1 (3q22.1) / ATP2C1 (3q22.1)ATP2C1 (3q22.1) / PARVA (11p15.3)ATP2C1 (3q22.1) / PDGFRA (4q12)
ATP2C1 (3q22.1) / SYT17 (16p12.3)CLK4 (5q35.3) / ATP2C1 (3q22.1)MTMR2 (11q21) / ATP2C1 (3q22.1)
NEK11 (3q22.1) / ATP2C1 (3q22.1)PSMD1 (2q37.1) / ATP2C1 (3q22.1)TJP2 (9q21.11) / ATP2C1 (3q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ATP2C1   13211
Cards
Entrez_Gene (NCBI)ATP2C1    ATPase secretory pathway Ca2+ transporting 1
AliasesATP2C1A; BCPM; HHD; PMR1; 
SPCA1; hSPCA1
GeneCards (Weizmann)ATP2C1
Ensembl hg19 (Hinxton)ENSG00000017260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000017260 [Gene_View]  ENSG00000017260 [Sequence]  chr3:130894550-131003202 [Contig_View]  ATP2C1 [Vega]
ICGC DataPortalENSG00000017260
TCGA cBioPortalATP2C1
AceView (NCBI)ATP2C1
Genatlas (Paris)ATP2C1
SOURCE (Princeton)ATP2C1
Genetics Home Reference (NIH)ATP2C1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP2C1  -     chr3:130894550-131003202 +  3q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP2C1  -     3q22.1   [Description]    (hg19-Feb_2009)
GoldenPathATP2C1 - 3q22.1 [CytoView hg19]  ATP2C1 - 3q22.1 [CytoView hg38]
ImmunoBaseENSG00000017260
Genome Data Viewer NCBIATP2C1 [Mapview hg19]  
OMIM169600   604384   
Gene and transcription
Genbank (Entrez)AB037768 AB209265 AF181120 AF181121 AF189723
RefSeq transcript (Entrez)NM_001001485 NM_001001486 NM_001001487 NM_001199179 NM_001199180 NM_001199181 NM_001199182 NM_001199183 NM_001199184 NM_001199185 NM_001378511 NM_001378512 NM_001378513 NM_001378514 NM_001378687 NM_014382
Consensus coding sequences : CCDS (NCBI)ATP2C1
Gene ExpressionATP2C1 [ NCBI-GEO ]   ATP2C1 [ EBI - ARRAY_EXPRESS ]   ATP2C1 [ SEEK ]   ATP2C1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP2C1 [ Firebrowse - Broad ]
GenevisibleExpression of ATP2C1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27032
GTEX Portal (Tissue expression)ATP2C1
Human Protein AtlasENSG00000017260-ATP2C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP2C1
Human Protein Atlas [tissue]ENSG00000017260-ATP2C1 [tissue]
Protein Interaction databases
BioGRIDATP2C1
STRING (EMBL)ATP2C1
ZODIACATP2C1
Ontologies - Pathways
Litterature
PubMed128 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATP2C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:00:34 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.