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ATP4B (ATPase H+/K+ transporting beta subunit)

Identity

Alias_namesATPase
Alias_symbol (synonym)ATP6B
Other alias
HGNC (Hugo) ATP4B
LocusID (NCBI) 496
Atlas_Id 53468
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113648806 and ends at 113658198 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP4B   820
Cards
Entrez_Gene (NCBI)ATP4B  496  ATPase H+/K+ transporting beta subunit
AliasesATP6B
GeneCards (Weizmann)ATP4B
Ensembl hg19 (Hinxton)ENSG00000186009 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186009 [Gene_View]  chr13:113648806-113658198 [Contig_View]  ATP4B [Vega]
ICGC DataPortalENSG00000186009
TCGA cBioPortalATP4B
AceView (NCBI)ATP4B
Genatlas (Paris)ATP4B
WikiGenes496
SOURCE (Princeton)ATP4B
Genetics Home Reference (NIH)ATP4B
Genomic and cartography
GoldenPath hg38 (UCSC)ATP4B  -     chr13:113648806-113658198 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP4B  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblATP4B - 13q34 [CytoView hg19]  ATP4B - 13q34 [CytoView hg38]
Mapping of homologs : NCBIATP4B [Mapview hg19]  ATP4B [Mapview hg38]
OMIM137217   
Gene and transcription
Genbank (Entrez)AK310129 BC029059 BC042846 BI764514 BM782259
RefSeq transcript (Entrez)NM_000705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP4B
Cluster EST : UnigeneHs.434202 [ NCBI ]
CGAP (NCI)Hs.434202
Alternative Splicing GalleryENSG00000186009
Gene ExpressionATP4B [ NCBI-GEO ]   ATP4B [ EBI - ARRAY_EXPRESS ]   ATP4B [ SEEK ]   ATP4B [ MEM ]
Gene Expression Viewer (FireBrowse)ATP4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)496
GTEX Portal (Tissue expression)ATP4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51164   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51164  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51164
Splice isoforms : SwissVarP51164
PhosPhoSitePlusP51164
Domaine pattern : Prosite (Expaxy)ATPASE_NA_K_BETA_1 (PS00390)    ATPASE_NA_K_BETA_2 (PS00391)   
Domains : Interpro (EBI)Na/K_ATPase_sub_beta   
Domain families : Pfam (Sanger)Na_K-ATPase (PF00287)   
Domain families : Pfam (NCBI)pfam00287   
Conserved Domain (NCBI)ATP4B
DMDM Disease mutations496
Blocks (Seattle)ATP4B
SuperfamilyP51164
Human Protein AtlasENSG00000186009
Peptide AtlasP51164
HPRD00669
IPIIPI00016421   
Protein Interaction databases
DIP (DOE-UCLA)P51164
IntAct (EBI)P51164
FunCoupENSG00000186009
BioGRIDATP4B
STRING (EMBL)ATP4B
ZODIACATP4B
Ontologies - Pathways
QuickGOP51164
Ontology : AmiGOprotein binding  plasma membrane  sodium:potassium-exchanging ATPase complex  potassium ion transport  sodium ion transport  cell adhesion  hydrogen:potassium-exchanging ATPase activity  response to organonitrogen compound  response to lipopolysaccharide  ion transmembrane transport  hydrogen ion transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  sodium:potassium-exchanging ATPase complex  potassium ion transport  sodium ion transport  cell adhesion  hydrogen:potassium-exchanging ATPase activity  response to organonitrogen compound  response to lipopolysaccharide  ion transmembrane transport  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Collecting duct acid secretion    Gastric acid secretion   
NDEx NetworkATP4B
Atlas of Cancer Signalling NetworkATP4B
Wikipedia pathwaysATP4B
Orthology - Evolution
OrthoDB496
GeneTree (enSembl)ENSG00000186009
Phylogenetic Trees/Animal Genes : TreeFamATP4B
HOVERGENP51164
HOGENOMP51164
Homologs : HomoloGeneATP4B
Homology/Alignments : Family Browser (UCSC)ATP4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP4B
dbVarATP4B
ClinVarATP4B
1000_GenomesATP4B 
Exome Variant ServerATP4B
ExAC (Exome Aggregation Consortium)ATP4B (select the gene name)
Genetic variants : HAPMAP496
Genomic Variants (DGV)ATP4B [DGVbeta]
DECIPHERATP4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP4B 
Mutations
ICGC Data PortalATP4B 
TCGA Data PortalATP4B 
Broad Tumor PortalATP4B
OASIS PortalATP4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP4B
DgiDB (Drug Gene Interaction Database)ATP4B
DoCM (Curated mutations)ATP4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP4B (select a term)
intoGenATP4B
Cancer3DATP4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM137217   
Orphanet
MedgenATP4B
Genetic Testing Registry ATP4B
NextProtP51164 [Medical]
TSGene496
GENETestsATP4B
Target ValidationATP4B
Huge Navigator ATP4B [HugePedia]
snp3D : Map Gene to Disease496
BioCentury BCIQATP4B
ClinGenATP4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD496
Chemical/Pharm GKB GenePA25114
Clinical trialATP4B
Miscellaneous
canSAR (ICR)ATP4B (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP4B
EVEXATP4B
GoPubMedATP4B
iHOPATP4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:55:42 CEST 2017

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