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ATP5C1 (ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1)

Identity

Alias_namesATP5CL1
ATP5C
Other alias
HGNC (Hugo) ATP5C1
LocusID (NCBI) 509
Atlas_Id 60622
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 7788104 and ends at 7807799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP5C1 (10p14) / ATP5C1 (10p14)ATP5C1 (10p14) / C10orf12 (10q24.1)PUM1 (1p35.2) / ATP5C1 (10p14)
TAF3 (10p14) / ATP5C1 (10p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5C1   833
Cards
Entrez_Gene (NCBI)ATP5C1  509  ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
AliasesATP5C; ATP5CL1
GeneCards (Weizmann)ATP5C1
Ensembl hg19 (Hinxton)ENSG00000165629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165629 [Gene_View]  chr10:7788104-7807799 [Contig_View]  ATP5C1 [Vega]
ICGC DataPortalENSG00000165629
TCGA cBioPortalATP5C1
AceView (NCBI)ATP5C1
Genatlas (Paris)ATP5C1
WikiGenes509
SOURCE (Princeton)ATP5C1
Genetics Home Reference (NIH)ATP5C1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5C1  -     chr10:7788104-7807799 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5C1  -     10p14   [Description]    (hg19-Feb_2009)
EnsemblATP5C1 - 10p14 [CytoView hg19]  ATP5C1 - 10p14 [CytoView hg38]
Mapping of homologs : NCBIATP5C1 [Mapview hg19]  ATP5C1 [Mapview hg38]
OMIM108729   
Gene and transcription
Genbank (Entrez)AK292896 AK294061 AK296803 BC000470 BC000931
RefSeq transcript (Entrez)NM_001001973 NM_001320886 NM_005174
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5C1
Cluster EST : UnigeneHs.271135 [ NCBI ]
CGAP (NCI)Hs.271135
Alternative Splicing GalleryENSG00000165629
Gene ExpressionATP5C1 [ NCBI-GEO ]   ATP5C1 [ EBI - ARRAY_EXPRESS ]   ATP5C1 [ SEEK ]   ATP5C1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)509
GTEX Portal (Tissue expression)ATP5C1
Human Protein AtlasENSG00000165629-ATP5C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36542   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP36542  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP36542
Splice isoforms : SwissVarP36542
PhosPhoSitePlusP36542
Domaine pattern : Prosite (Expaxy)ATPASE_GAMMA (PS00153)   
Domains : Interpro (EBI)ATP_synth_F1_gsu    ATP_synth_F1_gsu_CS   
Domain families : Pfam (Sanger)ATP-synt (PF00231)   
Domain families : Pfam (NCBI)pfam00231   
Conserved Domain (NCBI)ATP5C1
DMDM Disease mutations509
Blocks (Seattle)ATP5C1
SuperfamilyP36542
Human Protein Atlas [tissue]ENSG00000165629-ATP5C1 [tissue]
Peptide AtlasP36542
HPRD00156
IPIIPI00478410   IPI00395769   IPI01015376   
Protein Interaction databases
DIP (DOE-UCLA)P36542
IntAct (EBI)P36542
FunCoupENSG00000165629
BioGRIDATP5C1
STRING (EMBL)ATP5C1
ZODIACATP5C1
Ontologies - Pathways
QuickGOP36542
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, catalytic core F(1)  RNA binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial matrix  oxidative phosphorylation  ATP biosynthetic process  ATP biosynthetic process  membrane  ATPase activity  ATPase activity  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  myelin sheath  proton-transporting ATP synthase activity, rotational mechanism  extracellular exosome  ATP hydrolysis coupled cation transmembrane transport  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, catalytic core F(1)  RNA binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial matrix  oxidative phosphorylation  ATP biosynthetic process  ATP biosynthetic process  membrane  ATPase activity  ATPase activity  transmembrane transporter activity  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  myelin sheath  proton-transporting ATP synthase activity, rotational mechanism  extracellular exosome  ATP hydrolysis coupled cation transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkATP5C1
Atlas of Cancer Signalling NetworkATP5C1
Wikipedia pathwaysATP5C1
Orthology - Evolution
OrthoDB509
GeneTree (enSembl)ENSG00000165629
Phylogenetic Trees/Animal Genes : TreeFamATP5C1
HOVERGENP36542
HOGENOMP36542
Homologs : HomoloGeneATP5C1
Homology/Alignments : Family Browser (UCSC)ATP5C1
Gene fusions - Rearrangements
Fusion: Tumor Portal ATP5C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5C1
dbVarATP5C1
ClinVarATP5C1
1000_GenomesATP5C1 
Exome Variant ServerATP5C1
ExAC (Exome Aggregation Consortium)ENSG00000165629
GNOMAD BrowserENSG00000165629
Genetic variants : HAPMAP509
Genomic Variants (DGV)ATP5C1 [DGVbeta]
DECIPHERATP5C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5C1 
Mutations
ICGC Data PortalATP5C1 
TCGA Data PortalATP5C1 
Broad Tumor PortalATP5C1
OASIS PortalATP5C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5C1
DgiDB (Drug Gene Interaction Database)ATP5C1
DoCM (Curated mutations)ATP5C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5C1 (select a term)
intoGenATP5C1
Cancer3DATP5C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM108729   
Orphanet
MedgenATP5C1
Genetic Testing Registry ATP5C1
NextProtP36542 [Medical]
TSGene509
GENETestsATP5C1
Target ValidationATP5C1
Huge Navigator ATP5C1 [HugePedia]
snp3D : Map Gene to Disease509
BioCentury BCIQATP5C1
ClinGenATP5C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD509
Chemical/Pharm GKB GenePA25125
Clinical trialATP5C1
Miscellaneous
canSAR (ICR)ATP5C1 (select the gene name)
Probes
Litterature
PubMed69 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5C1
EVEXATP5C1
GoPubMedATP5C1
iHOPATP5C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:38:37 CET 2017

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