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ATP5EP2 (ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2)

Identity

Other alias-
HGNC (Hugo) ATP5EP2
LocusID (NCBI) 432369
Atlas_Id 60624
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27945206 and ends at 27945573 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP5EP2 (13q12.2) / CSF1 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5EP2   34026
Cards
Entrez_Gene (NCBI)ATP5EP2  432369  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2
Aliases
GeneCards (Weizmann)ATP5EP2
Ensembl hg19 (Hinxton)ENSG00000180389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180389 [Gene_View]  chr13:27945206-27945573 [Contig_View]  ATP5EP2 [Vega]
ICGC DataPortalENSG00000180389
TCGA cBioPortalATP5EP2
AceView (NCBI)ATP5EP2
Genatlas (Paris)ATP5EP2
WikiGenes432369
SOURCE (Princeton)ATP5EP2
Genetics Home Reference (NIH)ATP5EP2
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5EP2  -     chr13:27945206-27945573 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5EP2  -     13q12.2   [Description]    (hg19-Feb_2009)
EnsemblATP5EP2 - 13q12.2 [CytoView hg19]  ATP5EP2 - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIATP5EP2 [Mapview hg19]  ATP5EP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)EC567419 EC579276
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5EP2
Cluster EST : UnigeneHs.574118 [ NCBI ]
CGAP (NCI)Hs.574118
Alternative Splicing GalleryENSG00000180389
Gene ExpressionATP5EP2 [ NCBI-GEO ]   ATP5EP2 [ EBI - ARRAY_EXPRESS ]   ATP5EP2 [ SEEK ]   ATP5EP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5EP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)432369
GTEX Portal (Tissue expression)ATP5EP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTU8
Splice isoforms : SwissVarQ5VTU8
PhosPhoSitePlusQ5VTU8
Domains : Interpro (EBI)ATP_synth_F1_esu_mt   
Domain families : Pfam (Sanger)ATP-synt_Eps (PF04627)   
Domain families : Pfam (NCBI)pfam04627   
Conserved Domain (NCBI)ATP5EP2
DMDM Disease mutations432369
Blocks (Seattle)ATP5EP2
SuperfamilyQ5VTU8
Human Protein AtlasENSG00000180389
Peptide AtlasQ5VTU8
IPIIPI00176527   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTU8
IntAct (EBI)Q5VTU8
FunCoupENSG00000180389
BioGRIDATP5EP2
STRING (EMBL)ATP5EP2
ZODIACATP5EP2
Ontologies - Pathways
QuickGOQ5VTU8
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, catalytic core F(1)  mitochondrion  mitochondrial inner membrane  ATP synthesis coupled proton transport  ATPase activity  proton-transporting ATP synthase activity, rotational mechanism  ATP hydrolysis coupled cation transmembrane transport  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, catalytic core F(1)  mitochondrion  mitochondrial inner membrane  ATP synthesis coupled proton transport  ATPase activity  proton-transporting ATP synthase activity, rotational mechanism  ATP hydrolysis coupled cation transmembrane transport  
NDEx NetworkATP5EP2
Atlas of Cancer Signalling NetworkATP5EP2
Wikipedia pathwaysATP5EP2
Orthology - Evolution
OrthoDB432369
GeneTree (enSembl)ENSG00000180389
Phylogenetic Trees/Animal Genes : TreeFamATP5EP2
HOVERGENQ5VTU8
HOGENOMQ5VTU8
Homologs : HomoloGeneATP5EP2
Homology/Alignments : Family Browser (UCSC)ATP5EP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5EP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5EP2
dbVarATP5EP2
ClinVarATP5EP2
1000_GenomesATP5EP2 
Exome Variant ServerATP5EP2
ExAC (Exome Aggregation Consortium)ATP5EP2 (select the gene name)
Genetic variants : HAPMAP432369
Genomic Variants (DGV)ATP5EP2 [DGVbeta]
DECIPHERATP5EP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5EP2 
Mutations
ICGC Data PortalATP5EP2 
TCGA Data PortalATP5EP2 
Broad Tumor PortalATP5EP2
OASIS PortalATP5EP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5EP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5EP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATP5EP2
DgiDB (Drug Gene Interaction Database)ATP5EP2
DoCM (Curated mutations)ATP5EP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5EP2 (select a term)
intoGenATP5EP2
Cancer3DATP5EP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenATP5EP2
Genetic Testing Registry ATP5EP2
NextProtQ5VTU8 [Medical]
TSGene432369
GENETestsATP5EP2
Target ValidationATP5EP2
Huge Navigator ATP5EP2 [HugePedia]
snp3D : Map Gene to Disease432369
BioCentury BCIQATP5EP2
ClinGenATP5EP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD432369
Clinical trialATP5EP2
Miscellaneous
canSAR (ICR)ATP5EP2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5EP2
EVEXATP5EP2
GoPubMedATP5EP2
iHOPATP5EP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:01 CEST 2017

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