Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ATP5F1B (ATP synthase F1 subunit beta)

Identity

Other aliasATP5B
ATPMB
ATPSB
HEL-S-271
HGNC (Hugo) ATP5F1B
LocusID (NCBI) 506
Atlas_Id 57355
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56638175 and ends at 56646068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATP5F1B   830
Cards
Entrez_Gene (NCBI)ATP5F1B  506  ATP synthase F1 subunit beta
AliasesATP5B; ATPMB; ATPSB; HEL-S-271
GeneCards (Weizmann)ATP5F1B
Ensembl hg19 (Hinxton)ENSG00000110955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110955 [Gene_View]  ENSG00000110955 [Sequence]  chr12:56638175-56646068 [Contig_View]  ATP5F1B [Vega]
ICGC DataPortalENSG00000110955
TCGA cBioPortalATP5F1B
AceView (NCBI)ATP5F1B
Genatlas (Paris)ATP5F1B
WikiGenes506
SOURCE (Princeton)ATP5F1B
Genetics Home Reference (NIH)ATP5F1B
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5F1B  -     chr12:56638175-56646068 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5F1B  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblATP5F1B - 12q13.3 [CytoView hg19]  ATP5F1B - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBIATP5F1B [Mapview hg19]  ATP5F1B [Mapview hg38]
OMIM102910   
Gene and transcription
Genbank (Entrez)AK291085 BC016512 BI561028 DQ403107 FJ224288
RefSeq transcript (Entrez)NM_001686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5F1B
Cluster EST : UnigeneHs.406510 [ NCBI ]
CGAP (NCI)Hs.406510
Alternative Splicing GalleryENSG00000110955
Gene ExpressionATP5F1B [ NCBI-GEO ]   ATP5F1B [ EBI - ARRAY_EXPRESS ]   ATP5F1B [ SEEK ]   ATP5F1B [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5F1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)506
GTEX Portal (Tissue expression)ATP5F1B
Human Protein AtlasENSG00000110955-ATP5F1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP06576   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP06576  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP06576
Splice isoforms : SwissVarP06576
Catalytic activity : Enzyme3.6.3.14 [ Enzyme-Expasy ]   3.6.3.143.6.3.14 [ IntEnz-EBI ]   3.6.3.14 [ BRENDA ]   3.6.3.14 [ KEGG ]   
PhosPhoSitePlusP06576
Domaine pattern : Prosite (Expaxy)ATPASE_ALPHA_BETA (PS00152)   
Domains : Interpro (EBI)AAA+_ATPase    ATP_synth_F1_bsu    ATPase_a/bsu_AS    ATPase_F1/V1/A1_a/bsu_N    ATPase_F1/V1/A1_a/bsu_N_sf    ATPase_F1/V1/A1_a/bsu_nucl-bd    ATPase_F1/V1_b/a_C    P-loop_NTPase   
Domain families : Pfam (Sanger)ATP-synt_ab (PF00006)    ATP-synt_ab_N (PF02874)   
Domain families : Pfam (NCBI)pfam00006    pfam02874   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ATP5F1B
DMDM Disease mutations506
Blocks (Seattle)ATP5F1B
SuperfamilyP06576
Human Protein Atlas [tissue]ENSG00000110955-ATP5F1B [tissue]
Peptide AtlasP06576
IPIIPI00303476   IPI01021250   IPI01022109   IPI01021986   IPI01021839   IPI01021699   IPI01022836   
Protein Interaction databases
DIP (DOE-UCLA)P06576
IntAct (EBI)P06576
FunCoupENSG00000110955
BioGRIDATP5F1B
STRING (EMBL)ATP5F1B
ZODIACATP5F1B
Ontologies - Pathways
QuickGOP06576
Ontology : AmiGOangiogenesis  osteoblast differentiation  transporter activity  protein binding  ATP binding  nucleus  mitochondrion  mitochondrion  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase, catalytic core  mitochondrial matrix  mitochondrial matrix  plasma membrane  generation of precursor metabolites and energy  lipid metabolic process  ATP biosynthetic process  ATP biosynthetic process  negative regulation of cell adhesion involved in substrate-bound cell migration  mitochondrion organization  cell surface  membrane  membrane  ATPase activity  transmembrane transporter activity  mitochondrial membrane  MHC class I protein binding  cristae formation  mitochondrial nucleoid  mitochondrial ATP synthesis coupled proton transport  myelin sheath  angiostatin binding  positive regulation of blood vessel endothelial cell migration  proton-transporting ATP synthase complex  proton-transporting ATP synthase activity, rotational mechanism  proton-transporting ATPase activity, rotational mechanism  regulation of intracellular pH  extracellular exosome  ATP hydrolysis coupled cation transmembrane transport  proton transmembrane transport  
Ontology : EGO-EBIangiogenesis  osteoblast differentiation  transporter activity  protein binding  ATP binding  nucleus  mitochondrion  mitochondrion  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase, catalytic core  mitochondrial matrix  mitochondrial matrix  plasma membrane  generation of precursor metabolites and energy  lipid metabolic process  ATP biosynthetic process  ATP biosynthetic process  negative regulation of cell adhesion involved in substrate-bound cell migration  mitochondrion organization  cell surface  membrane  membrane  ATPase activity  transmembrane transporter activity  mitochondrial membrane  MHC class I protein binding  cristae formation  mitochondrial nucleoid  mitochondrial ATP synthesis coupled proton transport  myelin sheath  angiostatin binding  positive regulation of blood vessel endothelial cell migration  proton-transporting ATP synthase complex  proton-transporting ATP synthase activity, rotational mechanism  proton-transporting ATPase activity, rotational mechanism  regulation of intracellular pH  extracellular exosome  ATP hydrolysis coupled cation transmembrane transport  proton transmembrane transport  
NDEx NetworkATP5F1B
Atlas of Cancer Signalling NetworkATP5F1B
Wikipedia pathwaysATP5F1B
Orthology - Evolution
OrthoDB506
GeneTree (enSembl)ENSG00000110955
Phylogenetic Trees/Animal Genes : TreeFamATP5F1B
HOVERGENP06576
HOGENOMP06576
Homologs : HomoloGeneATP5F1B
Homology/Alignments : Family Browser (UCSC)ATP5F1B
Gene fusions - Rearrangements
Fusion : QuiverATP5F1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5F1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5F1B
dbVarATP5F1B
ClinVarATP5F1B
1000_GenomesATP5F1B 
Exome Variant ServerATP5F1B
ExAC (Exome Aggregation Consortium)ENSG00000110955
GNOMAD BrowserENSG00000110955
Varsome BrowserATP5F1B
Genetic variants : HAPMAP506
Genomic Variants (DGV)ATP5F1B [DGVbeta]
DECIPHERATP5F1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5F1B 
Mutations
ICGC Data PortalATP5F1B 
TCGA Data PortalATP5F1B 
Broad Tumor PortalATP5F1B
OASIS PortalATP5F1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP5F1B
BioMutasearch ATP5F1B
DgiDB (Drug Gene Interaction Database)ATP5F1B
DoCM (Curated mutations)ATP5F1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5F1B (select a term)
intoGenATP5F1B
Cancer3DATP5F1B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM102910   
Orphanet
DisGeNETATP5F1B
MedgenATP5F1B
Genetic Testing Registry ATP5F1B
NextProtP06576 [Medical]
TSGene506
GENETestsATP5F1B
Target ValidationATP5F1B
Huge Navigator ATP5F1B [HugePedia]
snp3D : Map Gene to Disease506
BioCentury BCIQATP5F1B
ClinGenATP5F1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD506
Chemical/Pharm GKB GenePA25122
Clinical trialATP5F1B
Miscellaneous
canSAR (ICR)ATP5F1B (select the gene name)
Probes
Litterature
PubMed151 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5F1B
EVEXATP5F1B
GoPubMedATP5F1B
iHOPATP5F1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:53:02 CET 2018

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