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ATP5F1C (ATP synthase F1 subunit gamma)

Identity

Alias (NCBI)ATP5C
ATP5C1
ATP5CL1
HGNC (Hugo) ATP5F1C
LocusID (NCBI) 509
Atlas_Id 80290
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 7788104 and ends at 7807799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)ATP5F1C   833
Cards
Entrez_Gene (NCBI)ATP5F1C    ATP synthase F1 subunit gamma
AliasesATP5C; ATP5C1; ATP5CL1
GeneCards (Weizmann)ATP5F1C
Ensembl hg19 (Hinxton)ENSG00000165629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165629 [Gene_View]  ENSG00000165629 [Sequence]  chr10:7788104-7807799 [Contig_View]  ATP5F1C [Vega]
ICGC DataPortalENSG00000165629
TCGA cBioPortalATP5F1C
AceView (NCBI)ATP5F1C
Genatlas (Paris)ATP5F1C
SOURCE (Princeton)ATP5F1C
Genetics Home Reference (NIH)ATP5F1C
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5F1C  -     chr10:7788104-7807799 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5F1C  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathATP5F1C - 10p14 [CytoView hg19]  ATP5F1C - 10p14 [CytoView hg38]
ImmunoBaseENSG00000165629
Genome Data Viewer NCBIATP5F1C [Mapview hg19]  
OMIM108729   
Gene and transcription
Genbank (Entrez)AK292896 AK294061 AK296803 BC000470 BC000931
RefSeq transcript (Entrez)NM_001001973 NM_001320886 NM_005174
Consensus coding sequences : CCDS (NCBI)ATP5F1C
Gene ExpressionATP5F1C [ NCBI-GEO ]   ATP5F1C [ EBI - ARRAY_EXPRESS ]   ATP5F1C [ SEEK ]   ATP5F1C [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5F1C [ Firebrowse - Broad ]
GenevisibleExpression of ATP5F1C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)509
GTEX Portal (Tissue expression)ATP5F1C
Human Protein AtlasENSG00000165629-ATP5F1C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36542   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP36542  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP36542
PhosPhoSitePlusP36542
Domaine pattern : Prosite (Expaxy)ATPASE_GAMMA (PS00153)   
Domains : Interpro (EBI)ATP_synth_F1_ATPase_gsu    ATP_synth_F1_gsu    ATP_synth_F1_gsu_CS   
Domain families : Pfam (Sanger)ATP-synt (PF00231)   
Domain families : Pfam (NCBI)pfam00231   
Conserved Domain (NCBI)ATP5F1C
SuperfamilyP36542
AlphaFold pdb e-kbP36542   
Human Protein Atlas [tissue]ENSG00000165629-ATP5F1C [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P36542
IntAct (EBI)P36542
BioGRIDATP5F1C
STRING (EMBL)ATP5F1C
ZODIACATP5F1C
Ontologies - Pathways
QuickGOP36542
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)  mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)  RNA binding  protein binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial matrix  oxidative phosphorylation  ATP biosynthetic process  ATP biosynthetic process  ATP synthesis coupled proton transport  membrane  ATPase  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)  mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)  RNA binding  protein binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  mitochondrial matrix  oxidative phosphorylation  ATP biosynthetic process  ATP biosynthetic process  ATP synthesis coupled proton transport  membrane  ATPase  cristae formation  mitochondrial ATP synthesis coupled proton transport  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
NDEx NetworkATP5F1C
Atlas of Cancer Signalling NetworkATP5F1C
Wikipedia pathwaysATP5F1C
Orthology - Evolution
OrthoDB509
GeneTree (enSembl)ENSG00000165629
Phylogenetic Trees/Animal Genes : TreeFamATP5F1C
Homologs : HomoloGeneATP5F1C
Homology/Alignments : Family Browser (UCSC)ATP5F1C
Gene fusions - Rearrangements
Fusion : QuiverATP5F1C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5F1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5F1C
dbVarATP5F1C
ClinVarATP5F1C
MonarchATP5F1C
1000_GenomesATP5F1C 
Exome Variant ServerATP5F1C
GNOMAD BrowserENSG00000165629
Varsome BrowserATP5F1C
ACMGATP5F1C variants
VarityP36542
Genomic Variants (DGV)ATP5F1C [DGVbeta]
DECIPHERATP5F1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5F1C 
Mutations
ICGC Data PortalATP5F1C 
TCGA Data PortalATP5F1C 
Broad Tumor PortalATP5F1C
OASIS PortalATP5F1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5F1C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATP5F1C
Mutations and Diseases : HGMDATP5F1C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaATP5F1C
DgiDB (Drug Gene Interaction Database)ATP5F1C
DoCM (Curated mutations)ATP5F1C
CIViC (Clinical Interpretations of Variants in Cancer)ATP5F1C
Cancer3DATP5F1C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM108729   
Orphanet
DisGeNETATP5F1C
MedgenATP5F1C
Genetic Testing Registry ATP5F1C
NextProtP36542 [Medical]
GENETestsATP5F1C
Target ValidationATP5F1C
Huge Navigator ATP5F1C [HugePedia]
ClinGenATP5F1C
Clinical trials, drugs, therapy
MyCancerGenomeATP5F1C
Protein Interactions : CTDATP5F1C
Pharm GKB GenePA25125
PharosP36542
Clinical trialATP5F1C
Miscellaneous
canSAR (ICR)ATP5F1C
HarmonizomeATP5F1C
DataMed IndexATP5F1C
Probes
Litterature
PubMed127 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXATP5F1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:42:54 CEST 2021

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