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ATP5G1 (ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9))

Identity

Alias_namesATP5G
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
Other aliasATP5A
HGNC (Hugo) ATP5G1
LocusID (NCBI) 516
Atlas_Id 60625
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48892786 and ends at 48895870 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP5G1 (17q21.32) / SEMA3B (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5G1   841
Cards
Entrez_Gene (NCBI)ATP5G1  516  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9)
AliasesATP5A; ATP5G
GeneCards (Weizmann)ATP5G1
Ensembl hg19 (Hinxton)ENSG00000159199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159199 [Gene_View]  chr17:48892786-48895870 [Contig_View]  ATP5G1 [Vega]
ICGC DataPortalENSG00000159199
TCGA cBioPortalATP5G1
AceView (NCBI)ATP5G1
Genatlas (Paris)ATP5G1
WikiGenes516
SOURCE (Princeton)ATP5G1
Genetics Home Reference (NIH)ATP5G1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5G1  -     chr17:48892786-48895870 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5G1  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblATP5G1 - 17q21.32 [CytoView hg19]  ATP5G1 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIATP5G1 [Mapview hg19]  ATP5G1 [Mapview hg38]
OMIM603192   
Gene and transcription
Genbank (Entrez)AK095669 AK311848 AL080089 AM393437 BC004963
RefSeq transcript (Entrez)NM_001002027 NM_005175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5G1
Cluster EST : UnigeneHs.80986 [ NCBI ]
CGAP (NCI)Hs.80986
Alternative Splicing GalleryENSG00000159199
Gene ExpressionATP5G1 [ NCBI-GEO ]   ATP5G1 [ EBI - ARRAY_EXPRESS ]   ATP5G1 [ SEEK ]   ATP5G1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5G1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)516
GTEX Portal (Tissue expression)ATP5G1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05496   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05496  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05496
Splice isoforms : SwissVarP05496
PhosPhoSitePlusP05496
Domaine pattern : Prosite (Expaxy)ATPASE_C (PS00605)   
Domains : Interpro (EBI)ATP_synth_F0_csu    ATP_synth_F0_csu_DDCD_BS    ATPase_proteolipid_c-like_dom   
Domain families : Pfam (Sanger)ATP-synt_C (PF00137)   
Domain families : Pfam (NCBI)pfam00137   
Conserved Domain (NCBI)ATP5G1
DMDM Disease mutations516
Blocks (Seattle)ATP5G1
SuperfamilyP05496
Human Protein AtlasENSG00000159199
Peptide AtlasP05496
HPRD04428
IPIIPI00009075   IPI00930428   IPI00964501   IPI00790579   IPI00963825   IPI00796559   IPI00967857   
Protein Interaction databases
DIP (DOE-UCLA)P05496
IntAct (EBI)P05496
FunCoupENSG00000159199
BioGRIDATP5G1
STRING (EMBL)ATP5G1
ZODIACATP5G1
Ontologies - Pathways
QuickGOP05496
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  lipid binding  ATP synthesis coupled proton transport  ATP hydrolysis coupled proton transport  integral component of membrane  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  lipid binding  ATP synthesis coupled proton transport  ATP hydrolysis coupled proton transport  integral component of membrane  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Pathways : KEGGOxidative phosphorylation    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkATP5G1
Atlas of Cancer Signalling NetworkATP5G1
Wikipedia pathwaysATP5G1
Orthology - Evolution
OrthoDB516
GeneTree (enSembl)ENSG00000159199
Phylogenetic Trees/Animal Genes : TreeFamATP5G1
HOVERGENP05496
HOGENOMP05496
Homologs : HomoloGeneATP5G1
Homology/Alignments : Family Browser (UCSC)ATP5G1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5G1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5G1
dbVarATP5G1
ClinVarATP5G1
1000_GenomesATP5G1 
Exome Variant ServerATP5G1
ExAC (Exome Aggregation Consortium)ATP5G1 (select the gene name)
Genetic variants : HAPMAP516
Genomic Variants (DGV)ATP5G1 [DGVbeta]
DECIPHERATP5G1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5G1 
Mutations
ICGC Data PortalATP5G1 
TCGA Data PortalATP5G1 
Broad Tumor PortalATP5G1
OASIS PortalATP5G1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5G1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5G1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5G1
DgiDB (Drug Gene Interaction Database)ATP5G1
DoCM (Curated mutations)ATP5G1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5G1 (select a term)
intoGenATP5G1
Cancer3DATP5G1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603192   
Orphanet
MedgenATP5G1
Genetic Testing Registry ATP5G1
NextProtP05496 [Medical]
TSGene516
GENETestsATP5G1
Target ValidationATP5G1
Huge Navigator ATP5G1 [HugePedia]
snp3D : Map Gene to Disease516
BioCentury BCIQATP5G1
ClinGenATP5G1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD516
Chemical/Pharm GKB GenePA25131
Clinical trialATP5G1
Miscellaneous
canSAR (ICR)ATP5G1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5G1
EVEXATP5G1
GoPubMedATP5G1
iHOPATP5G1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:11 CEST 2017

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