Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ATP5G2 (ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9))

Identity

Alias_namesATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 2
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)
Other aliasATP5A
HGNC (Hugo) ATP5G2
LocusID (NCBI) 517
Atlas_Id 60626
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53665160 and ends at 53676728 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATF7 (12q13.13) / ATP5G2 (12q13.13)ATP5G2 (12q13.13) / ATP5G2 (12q13.13)ATP5G2 (12q13.13) / ATP5G3 (2q31.1)
ATP5G2 (12q13.13) / DDX21 (10q22.1)ATP5G2 (12q13.13) / HMGA1 (6p21.31)HS3ST4 (16p12.1) / ATP5G2 (12q13.13)
MEN1 (11q13.1) / ATP5G2 (12q13.13)PIM3 (22q13.33) / ATP5G2 (12q13.13)RTN4 (2p16.1) / ATP5G2 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5G2   842
Cards
Entrez_Gene (NCBI)ATP5G2  517  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9)
AliasesATP5A
GeneCards (Weizmann)ATP5G2
Ensembl hg19 (Hinxton)ENSG00000135390 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135390 [Gene_View]  chr12:53665160-53676728 [Contig_View]  ATP5G2 [Vega]
ICGC DataPortalENSG00000135390
TCGA cBioPortalATP5G2
AceView (NCBI)ATP5G2
Genatlas (Paris)ATP5G2
WikiGenes517
SOURCE (Princeton)ATP5G2
Genetics Home Reference (NIH)ATP5G2
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5G2  -     chr12:53665160-53676728 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5G2  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblATP5G2 - 12q13.13 [CytoView hg19]  ATP5G2 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIATP5G2 [Mapview hg19]  ATP5G2 [Mapview hg38]
OMIM603193   
Gene and transcription
Genbank (Entrez)AK075351 AK130971 AK311357 AV737582 BC013839
RefSeq transcript (Entrez)NM_001002031 NM_001330269 NM_005176
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5G2
Cluster EST : UnigeneHs.524464 [ NCBI ]
CGAP (NCI)Hs.524464
Alternative Splicing GalleryENSG00000135390
Gene ExpressionATP5G2 [ NCBI-GEO ]   ATP5G2 [ EBI - ARRAY_EXPRESS ]   ATP5G2 [ SEEK ]   ATP5G2 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5G2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)517
GTEX Portal (Tissue expression)ATP5G2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ06055   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ06055  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ06055
Splice isoforms : SwissVarQ06055
PhosPhoSitePlusQ06055
Domaine pattern : Prosite (Expaxy)ATPASE_C (PS00605)   
Domains : Interpro (EBI)ATP_synth_F0_csu    ATP_synth_F0_csu_DDCD_BS    ATPase_proteolipid_c-like_dom   
Domain families : Pfam (Sanger)ATP-synt_C (PF00137)   
Domain families : Pfam (NCBI)pfam00137   
Conserved Domain (NCBI)ATP5G2
DMDM Disease mutations517
Blocks (Seattle)ATP5G2
SuperfamilyQ06055
Human Protein AtlasENSG00000135390
Peptide AtlasQ06055
HPRD04429
IPIIPI00028482   IPI00792819   IPI00456749   IPI01020864   IPI01022738   
Protein Interaction databases
DIP (DOE-UCLA)Q06055
IntAct (EBI)Q06055
FunCoupENSG00000135390
BioGRIDATP5G2
STRING (EMBL)ATP5G2
ZODIACATP5G2
Ontologies - Pathways
QuickGOQ06055
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrial outer membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  lipid binding  ATP synthesis coupled proton transport  ATP hydrolysis coupled proton transport  integral component of membrane  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrial outer membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  lipid binding  ATP synthesis coupled proton transport  ATP hydrolysis coupled proton transport  integral component of membrane  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Pathways : KEGGOxidative phosphorylation    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkATP5G2
Atlas of Cancer Signalling NetworkATP5G2
Wikipedia pathwaysATP5G2
Orthology - Evolution
OrthoDB517
GeneTree (enSembl)ENSG00000135390
Phylogenetic Trees/Animal Genes : TreeFamATP5G2
HOVERGENQ06055
HOGENOMQ06055
Homologs : HomoloGeneATP5G2
Homology/Alignments : Family Browser (UCSC)ATP5G2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5G2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5G2
dbVarATP5G2
ClinVarATP5G2
1000_GenomesATP5G2 
Exome Variant ServerATP5G2
ExAC (Exome Aggregation Consortium)ATP5G2 (select the gene name)
Genetic variants : HAPMAP517
Genomic Variants (DGV)ATP5G2 [DGVbeta]
DECIPHERATP5G2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5G2 
Mutations
ICGC Data PortalATP5G2 
TCGA Data PortalATP5G2 
Broad Tumor PortalATP5G2
OASIS PortalATP5G2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5G2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5G2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5G2
DgiDB (Drug Gene Interaction Database)ATP5G2
DoCM (Curated mutations)ATP5G2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5G2 (select a term)
intoGenATP5G2
Cancer3DATP5G2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603193   
Orphanet
MedgenATP5G2
Genetic Testing Registry ATP5G2
NextProtQ06055 [Medical]
TSGene517
GENETestsATP5G2
Huge Navigator ATP5G2 [HugePedia]
snp3D : Map Gene to Disease517
BioCentury BCIQATP5G2
ClinGenATP5G2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD517
Chemical/Pharm GKB GenePA25132
Clinical trialATP5G2
Miscellaneous
canSAR (ICR)ATP5G2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5G2
EVEXATP5G2
GoPubMedATP5G2
iHOPATP5G2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:01:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.