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ATP5G3 (ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9))

Identity

Alias_namesATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
Other aliasP3
HGNC (Hugo) ATP5G3
LocusID (NCBI) 518
Atlas_Id 60627
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 175176258 and ends at 175181663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP5G2 (12q13.13) / ATP5G3 (2q31.1)ATP5G3 (2q31.1) / RPS18 (6p21.32)ATP5G3 (2q31.1) / SPATA13 (13q12.12)
GSTP1 (11q13.2) / ATP5G3 (2q31.1)LDHA (11p15.1) / ATP5G3 (2q31.1)SRRT (7q22.1) / ATP5G3 (2q31.1)
TCF7L2 (10q25.2) / ATP5G3 (2q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ATP5G3   843
Cards
Entrez_Gene (NCBI)ATP5G3  518  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9)
AliasesP3
GeneCards (Weizmann)ATP5G3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:175176258-175181663 [Contig_View]  ATP5G3 [Vega]
TCGA cBioPortalATP5G3
AceView (NCBI)ATP5G3
Genatlas (Paris)ATP5G3
WikiGenes518
SOURCE (Princeton)ATP5G3
Genetics Home Reference (NIH)ATP5G3
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5G3  -     chr2:175176258-175181663 -  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5G3  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblATP5G3 - 2q31.1 [CytoView hg19]  ATP5G3 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIATP5G3 [Mapview hg19]  ATP5G3 [Mapview hg38]
OMIM602736   
Gene and transcription
Genbank (Entrez)AK125917 AK311999 AW025164 BC106881 BF210704
RefSeq transcript (Entrez)NM_001002258 NM_001190329 NM_001689
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5G3
Cluster EST : UnigeneHs.429 [ NCBI ]
CGAP (NCI)Hs.429
Gene ExpressionATP5G3 [ NCBI-GEO ]   ATP5G3 [ EBI - ARRAY_EXPRESS ]   ATP5G3 [ SEEK ]   ATP5G3 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5G3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)518
GTEX Portal (Tissue expression)ATP5G3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48201   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48201  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48201
Splice isoforms : SwissVarP48201
PhosPhoSitePlusP48201
Domaine pattern : Prosite (Expaxy)ATPASE_C (PS00605)   
Domains : Interpro (EBI)ATP_synth_F0_csu    ATP_synth_F0_csu_DDCD_BS    ATPase_proteolipid_c-like_dom   
Domain families : Pfam (Sanger)ATP-synt_C (PF00137)   
Domain families : Pfam (NCBI)pfam00137   
Conserved Domain (NCBI)ATP5G3
DMDM Disease mutations518
Blocks (Seattle)ATP5G3
SuperfamilyP48201
Peptide AtlasP48201
HPRD04112
IPIIPI00008727   IPI00977456   
Protein Interaction databases
DIP (DOE-UCLA)P48201
IntAct (EBI)P48201
BioGRIDATP5G3
STRING (EMBL)ATP5G3
ZODIACATP5G3
Ontologies - Pathways
QuickGOP48201
Ontology : AmiGOmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrial outer membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  lipid binding  ATP synthesis coupled proton transport  ATP hydrolysis coupled proton transport  integral component of membrane  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Ontology : EGO-EBImitochondrial proton-transporting ATP synthase complex, coupling factor F(o)  transporter activity  mitochondrial outer membrane  mitochondrial proton-transporting ATP synthase complex  ATP biosynthetic process  lipid binding  ATP synthesis coupled proton transport  ATP hydrolysis coupled proton transport  integral component of membrane  mitochondrial ATP synthesis coupled proton transport  proton-transporting ATP synthase activity, rotational mechanism  
Pathways : KEGGOxidative phosphorylation    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkATP5G3
Atlas of Cancer Signalling NetworkATP5G3
Wikipedia pathwaysATP5G3
Orthology - Evolution
OrthoDB518
Phylogenetic Trees/Animal Genes : TreeFamATP5G3
HOVERGENP48201
HOGENOMP48201
Homologs : HomoloGeneATP5G3
Homology/Alignments : Family Browser (UCSC)ATP5G3
Gene fusions - Rearrangements
Tumor Fusion PortalATP5G3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5G3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5G3
dbVarATP5G3
ClinVarATP5G3
1000_GenomesATP5G3 
Exome Variant ServerATP5G3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP518
Genomic Variants (DGV)ATP5G3 [DGVbeta]
DECIPHERATP5G3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5G3 
Mutations
ICGC Data PortalATP5G3 
TCGA Data PortalATP5G3 
Broad Tumor PortalATP5G3
OASIS PortalATP5G3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATP5G3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDATP5G3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ATP5G3
DgiDB (Drug Gene Interaction Database)ATP5G3
DoCM (Curated mutations)ATP5G3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5G3 (select a term)
intoGenATP5G3
Cancer3DATP5G3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602736   
Orphanet
DisGeNETATP5G3
MedgenATP5G3
Genetic Testing Registry ATP5G3
NextProtP48201 [Medical]
TSGene518
GENETestsATP5G3
Target ValidationATP5G3
Huge Navigator ATP5G3 [HugePedia]
snp3D : Map Gene to Disease518
BioCentury BCIQATP5G3
ClinGenATP5G3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD518
Chemical/Pharm GKB GenePA25133
Clinical trialATP5G3
Miscellaneous
canSAR (ICR)ATP5G3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5G3
EVEXATP5G3
GoPubMedATP5G3
iHOPATP5G3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:57 CET 2017

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